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11-1479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2071632 [Map]; Strand: c
      • AT1G06740.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 11-1479-1 - 3-prime edge 
    GCTCCAGCTA AGAAACCAAA AAAGAAAAAG CGCAAATTAG CTAACAACTT 
    TGATTTCCGG TGCTGGTACT GACCATGAAA TGGTCGTTGG TATGGAATTT 
    TCTGATGCCT ATGCTTGTAG GAGAGCGATT AAAAATGCAG CAATTTCTCT 
    GCGTTTTGAG ATGCGAACGA TTAAATCTGA CAAGACTCGC TTCACAGCAA 
    AGTGCAACAG CAAGGGTTGC CCATGGAGGA TTCACTGCGC CAAAGTTTCT 
    AATGCTCCAA CTTTTACGAT AAGGACTATT CACGGGAGTC ATACTTGTGG 
    TGGGATTTCG CATCTTGGTC ATCAGCAAGC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2047111 [Map]; Strand: c
      • AT1G06670.1 - [+] show detail - nuclear DEIH-boxhelicase
        Distance: 0; Region: exon14 (CDS)
      • AT1G06680.1 - [+] show detail - photosystem II subunit P-1
        Distance: -714; Region: promoter
      • AT1G06680.2 - [+] show detail - photosystem II subunit P-1
        Distance: -775; Region: promoter
    Flanking Genome Sequence: 11-1479-1 - 5-prime edge 
    GCTGGAGCAG TGTTTGAGTC AGGTTGCTCA TTCCCACTGA CAAGATTCGA 
    AGGAATGCTC TCTTTCTCCT TACCCGGATC

AT1G06670.1

Model type
Protein coding
Short Description
nuclear DEIH-boxhelicase
Curator Summary
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins
Computational Description
nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06680.1

Model type
Protein coding
Short Description
photosystem II subunit P-1
Curator Summary
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational Description
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 287 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06680.2

Model type
Protein coding
Short Description
photosystem II subunit P-1
Curator Summary
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational Description
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06740.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 2.7e-53 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
Link
InterPro Scan - TAIR