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11-1501-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9786424 [Map]; Strand: c
      • AT1G28070.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2426; Region: intergenic
      • AT1G28080.1 - [+] show detail - RING finger protein
        Distance: -3402; Region: intergenic
    Flanking Genome Sequence: 11-1501-1 - 3-prime edge 
    ATATGCATGC TCAAAAAGGT TCCTTACTAC ACAGTTATCT TTATTCTGTT 
    TTAAAACCCT TTTTCTATAT TACTACATTA AATTAGCGAG ATATGACAAC 
    GAAATAGTCA ATCAGTCGTT GCTACGTCAA AATTTCGCTA ACTTTTTGCA 
    ACNGATTTAG TAATAATATG TTTCTTAAAA TATTTCACTA AGATTAATCA 
    GCTGCTAAGT TAGTAGATCA CCAGATCACT CTTAGTCTAC GTNGGACTCA 
    TGCTTATCAG TTAATAGTTA TCACCGTCGC AAAAATCTTT TTTGTTTTTG 
    TTTTTGGTAT ACGATCATAA TAAACAAAAT AAATTTTATG TTTTTACTAA 
    ACATTCATAA ATTATCAATA ATTGTCTTTT AGTTTAGGGA AAGTATACTT 
    CGATCTATTT CATTGGGAAG TTTGCTAAGC GAAAATATAC ATTTATGATC 
    AGATATTTAG GGATGAACTA TTATGACCGT TTATTTTTGA ATCAATAAAC 
    TATGAGCTTA TTATATATGT ATATAGACAT TTTCGTATAT TATTATAAAA 
    GTTATTTGNT TTCTATGTGA ATTATCAAGA AGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2335620 [Map]; Strand: c
      • AT4G04630.1 - [+] show detail - Protein of unknown function, DUF584
        Distance: -2820; Region: intergenic
      • AT4G04632.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 3966; Region: intergenic
    2. Chromosome: 2; Position: 7956530 [Map]; Strand: c
      • AT2G18310.1 - [+] show detail - pre-tRNA
        Distance: -780; Region: promoter
      • AT2G18320.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-1501-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTAATTAGA TGCGATCGGA ATACTCATTT TGGTGTAGCA 
    TTGTCTTTTT ATTTGGTAAA GGCACTTTAG TCCAACCTGA AATTCGCGAA 
    CATGTATATC TATTTTTAAC CTCGGCTTGG TCAGATCCGT TTTTTCTCGG 
    ATTTGTATTT CAAAGTCNCC AGCNCGGGNN GANAACNANG CCTGCCNNAC 
    AATAACCCAC AGTCTAATAT GGTATCAGAG CCCGATCCGT ACATACTCAA 
    CCCGATCCAC ATCGGTCCGG CCCAATATTT GGCCCGCCGA TCCATGCCCA 
    AACATATCGA GATCAATGGC TAGAANAGCC ATCATCTCGA GGGGGCGTAT 
    TAGAGACAAT GTTCCACATN CGGAAGTTGA GTAGGATCTT AAGTGGNGNN 
    NNNANAANNC NAANANGGCC ANNCGNGNNC CAGNNGAGCN NNGCATNNAN 
    GGGGGANGGN GNGGGCGNAA ANNTNANGGG GNANNNNNGN ANGGNCCGNN 
    TNGNGGNNTG NCNGTGGNNG GGNCGAAAAT NAGGNGNNNN NNNNGAATAA 
    CAGNANNTAN GAGGCNAANN AATANCCNAG NNAGANANNN NNGNAAAANT 
    CANACGAGGA GAGCGGANCA CNANNNANNN ANTGNGNACN GCACNTNNAC 
    CNNGNNNNNA NACGANNAAN CNAANNTNNT CCNNNNNGNN GNCNACNTAC 
    GNAANCGNAG NGCANNNANN ANNNNAAANN AANGCGATTN GNNNNNANTN 
    NCTAN

AT1G28070.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28080.1

Model type
Protein coding
Short Description
RING finger protein
Computational Description
RING finger protein; BEST Arabidopsis thaliana protein match is: RING finger protein (TAIR:AT5G13250.1); Has 133 Blast hits to 133 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18310.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asn (anticodon: GTT)
Link
InterPro Scan - TAIR

AT2G18320.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G19880.1); Has 213 Blast hits to 206 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04630.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF584
Computational Description
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT4G21970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04632.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR