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11-1504-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44024 [Map]; Strand: c
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -827; Region: promoter
    Flanking Genome Sequence: 11-1504-1 - 5-prime edge 
    GNTANCNNTN AATAGNNNGA CNANNTGANA AANNGAAGCT GAGCAGCANG 
    ANCTGGAGGA NNGNGCTACT AGATGACTGG GNNAAAAATG ATGATCTTAT 
    CGAATNGNAA NCAATAAATT CAGNGTTTTT TTGNGGTTAA ATTTANGAAT 
    AAATCCTGAT ATTATGAATN AAATCTAATG TTTGGTTAAA TTGAGTATTT 
    TTTTTACATA AATAAAAACN GNAATGTTGA TGTATATNGG GGAATCAGTA 
    TATTAGCTNG GGTAACTATA CTTNTGGAAA NACTNGAANA TTTAACTTAT 
    TTGCAAAATN ATAATTNANT CCCGAAAAAT ACAGACGACG GGACACGACA 
    ACATATAANC AGGNTAGAAT NTTGGAAAAT TTNGNNTACN TAACCTATAT 
    AAATACCTAA ANGTTCTGGT NGGGTNNAAA AGCCTTTNCA AAAGNNCCAT 
    TTTTTTANTN NAGGGACATT NTACACNGGA AATANGTGGA GGNNANAAAA 
    AAAAGGGNNA TTTGGNAAGN CTTTTTANNA TTAAAACGCC NATNTTAANG 
    AGTNNAGTTT NNTTTNNANN ANCCNNTTNC TAATTAANGT NAAANNNTNG 
    CGACCNTNNC ATAAAAAAAA NTTTTTNNAA NNNATTCNCA TNTGTACCCA 
    AAATNNTANA GCNCCGTAAA AAGTTGNNCT NNTTAANTNN CGNNGNANTN 
    CNTANNCGAT TNGNANAANA TAATGNNNAA GAGGGNAAAA T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44091 [Map]; Strand: c
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -894; Region: promoter
    Flanking Genome Sequence: 11-1504-1 - 3-prime edge 
    ATGATTGACT GTCTAATTGA GAGGAGATGA GTTTACAAAA GTAACTTTAG 
    AAAACAAGAA ACGAGAGAAA CGACCTAAAC AATCCGTTTT AAAATTCCAT 
    AAATAAAAAA CATAAGAAAT CAAGAAAAAG AAAAATAAAG AAGAGAACAT 
    TCCAAACTAG TTTAGTAGGT TGGAGAAAGC TGACCACCAA AAAAAATTTA 
    ATCTGACAAA ACTATTTTTT TGAATATATA TTAGTTATTG TGAAAATAAA 
    AACGTGATGA CATCATAGTG ACATGGGCCT GCATGAACAA TTTAATCAGA 
    TATGTTTTTT TTACCGCAAT CAGATATGTT ATTACATACA TATCAATATT 
    ACTTCATTTT ATCTTAAATT ATATAGCTCA TGTTTAATTC TGGAATTGTT 
    TTCATAACTA AATTTTTTTC GATAAAGTTG TCATTTTAAA ATATTTCCTA 
    NAGTTCTAAT TAAGTTTAGN GTTGNGTGAA TGGAANANTT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR