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11-1552-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414397 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -644; Region: promoter
    Flanking Genome Sequence: 11-1552-1 - 5-prime edge 
    GCTCCATTAG CGATGGAAGA CGGTGATACA TCTTGATCAG AAGAAATGGG 
    GATTGTTTTA GCAGTGGATC AAAAGAAATT AGGTGTTGGT TTGCGAGGAA 
    ACGAAAAGAT TGTGAGATCG ATGAGCAAAA ACCAGAGCTT GTTTGATTGG 
    TGCGGTTTAT GTGTTTGGAA ACGGAAATGA AAATGGAAAG GCTGCTTCTT 
    TGCACGTTTA ACTAACTACT CTTCTTTCCC ATACACACAC AGAGAGTTGT 
    TAATTACGAA TTTACCCTTC CCTTTGAACT CTTCTCTTCT TCTTTTGCCC 
    TTCCGGGTCG TCTCCTTCCC CTTTGACACT CCCACGTTTT CAGCAATATC 
    AATTTTTGTT TAATCGACGG CTGTATTAGT TGGTTGTTAA GAAATTTCAG 
    ACTCGTTCCT CCATAATTCA GATATAGGAG GAGAACATAA ACTATATTAT 
    ATGATTATGG AGTAATGACA GTGATTTATG CTTTATGTTG TTCACCAAAA 
    ACTATTCATT AAAATTAAGC GGGTTCACCT AAATCTGATG CTTATAGCCT 
    GCTTGTGGCA CAACGATAAC GATAGGTAAT TCAACTACTA ATCTNCAATT 
    TTATCTATTT CAATGACTCC AATCNTATCA TAATTAGACT CTGTTCGNTA 
    TAAGAAGGTA GAAAGCNNCC TCNTTCANGG AAAAGNGGCC AATTTCNCGT 
    NTCAAATAAT NTAANCCNCC CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414513 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -528; Region: promoter
    Flanking Genome Sequence: 11-1552-1 - 3-prime edge 
    AATGGAGCCG TTTCTACGGA GTGTCTCTGA CCGTTGGCCG GTCATCGCTC 
    AGGCTGCCAC GTGGACGGTG CTTCTAATGT TTACGGTGGC CGTCGCTTCG 
    TTTGCTCCGG AGATGGCTTT TGTGTCTACG GTGTCGTCTT CGTGCGGAGG 
    AGGAGATGGT TTCGTGAAGA TTCCGATGGA TTTTGCAGGG GAGAGTATAT 
    GCGTGCCGTC TAATATGGTG AAGAGATCGC GTTTTGATTT GTTTGTGCCT 
    TCGATTTTCG CGGCGGTTAT GGTCACTGCT TCGGCTTGTT TGATCCGATC 
    ATGTATTGGC ACGGAGAATG TGGATGATTT TTAATAAACA CTTGTAAATT 
    AATTAATAAT CTTGTATTCA GTTACTACAT AACATCCACC ATTTTGTTAT 
    TCCAAATCAC GACATTATAT TAAGCTGCGT CGTANAATAG TTGACATTTG 
    TCAGTTTTAA CCCAACAATT TGATCTGTTA TGTTATCCAC GACCCAAAAT 
    CACAACTAAA CCATTTGACA TTCCGTTTTG CCATCGTCCG GTTTTAAATC 
    ACCATCAAAT TAGTAATTAN TCNAAGTGAT CATGACAAAT GCCGANAGAT 
    ACAGGAAGAC ATTTGTGTNA TTCTGAGGTT AGNCAGGTTT GCAAAGGGGG 
    ANNGGAACTA TCTCNCATGT NCTNAAAGAC TGCCCTTCAA TGTNNGGNAA 
    TTCNAACAAG NATTNGTTCC TAGGAGGAAA CACAAGNCNT NT

AT1G07795.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR