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11-1581-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5501229 [Map]; Strand: c
      • AT3G16230.1 - [+] show detail - Predicted eukaryotic LigT
        Distance: 0; Region: exon5 (CDS)
      • AT3G16230.2 - [+] show detail - Predicted eukaryotic LigT
        Distance: 0; Region: exon5 (CDS)
      • AT3G16230.3 - [+] show detail - Predicted eukaryotic LigT
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-1581-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT NCTTCANTNA CTTCCTTAGA AACATCACTT 
    GATTTGCTAC ACTGAGCTAC TTNTTGGACT TCATTTCCAG CTNCTGNCTC 
    ATCATGTGAA AGCCATAAAG GTGGAAACTT TCAAAACCGG GATGGAATAT 
    TCGATTAAAC TGCTAAATTA AAGATCCTAA CCAGCAATAA CTGAAGAGGT 
    TTGAGTGGAG ATGGGTCTCC ACCCTAAATT TACCATCTTC TGCTTCTTAT 
    ATCCATCCAT GGCACTCTTC TCACTTCCCC TAAAGCTCAG GATACTAAAA 
    GATTCCTGAA ATGTGAAGTG GTGTAGCCAC AAAACATCAA ATCCAAATTC 
    CACGAAAAAA AATCTCAAAT CACTTACAAA GACTAACACT TGCCAAAAAC 
    TAGAGTAACA AAATGCCAAG GAGACAACAA ATTATTGAAT TACCGGTTTC 
    GATTGAAAAC ATCTACTCGT AAACCCAAAT ACACGATCAA TCCTACAAAA 
    CAAACAACAT GAGACATAAA CAGAAGAAAT AAGACAAAAT CAAACGATTT 
    TTCTAATCCA ACCATCGCAA GGAAGAAAAT AAAATTTTGG GTTTTGTTAG 
    ATTGATAAAA GATCATAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5501239 [Map]; Strand: c
      • AT3G16230.1 - [+] show detail - Predicted eukaryotic LigT
        Distance: 0; Region: exon5 (CDS)
      • AT3G16230.2 - [+] show detail - Predicted eukaryotic LigT
        Distance: 0; Region: exon5 (CDS)
      • AT3G16230.3 - [+] show detail - Predicted eukaryotic LigT
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-1581-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAC 
    AGCTTCAGTT GTTTCAGCTG GAAAGCATTC AGTTTCTCTT GAGGTTCTTT 
    GTTCCTTCTG TTACTTGAAG TTTCTTTGTG CTCTTTTGTT TCAACTACTT 
    AACAGACTTT ATGTAATTGG TTTCAGGTTG GGGCCTTCTT TGATTAAGTT 
    CATTAGAGGG AAAGAGTAAG AGCTCTAGTT TGTTAATCTT ATCCTTCGAG 
    GTATACTTAC GTGCTAACGG GTTTGCATTC TTTGCAAAAG AGGAACGACG 
    CAGATGAAAC TTGAAGAGGA AATGGGAGTG AAGATCATTC TTCCATCATC 
    AAGGAACAAA GATCATATCA GTAAGAGTTT TTGGAACCAA CTGTAATGTA 
    TAGTTTGATA TCTGAGCCCT TAATCCTAGC TGGCTAACTA GCTACCATTT 
    TTAAACTGAT TTTGGTTCAC CAAATCTTGT TTTGTTGTGT CCTTTTTTCT 
    TTGCAGGCAT TGAAGGCGGT TCAGTGGATT GTGTGACTAA AGCT

AT3G16230.1

Model type
Protein coding
Short Description
Predicted eukaryotic LigT
Computational Description
Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1); Has 263 Blast hits to 258 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 13; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16230.2

Model type
Protein coding
Short Description
Predicted eukaryotic LigT
Computational Description
Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).
Link
InterPro Scan - TAIR

AT3G16230.3

Model type
Protein coding
Short Description
Predicted eukaryotic LigT
Computational Description
Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).
Link
InterPro Scan - TAIR