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11-1615-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2942919 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 23723; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -16175; Region: intergenic
    2. Chromosome: 4; Position: 2947366 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 28170; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -11728; Region: intergenic
    Flanking Genome Sequence: 11-1615-1 - 5-prime edge 
    ATCTAGTCAT ATTTTACTCC AAAACACTAA CCAAGCTACC ANCCGGGGCC 
    NGAAAGACCA CGCGGGCNCT ATAGANNNCC GTATGAGTNT TNAGCGTNTG 
    TATNTTCTAA CAAGGAAACA TTACTTTAGC TTTTGGGAAT CAGTTATGGT 
    TCTAGTTCTT ATACTTAATC ATACACATGA CATCTAGTCA TATTTGACTC 
    CAAAAAACTA ACGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2921195 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 1999; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -32768; Region: intergenic
    2. Chromosome: 4; Position: 2924222 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 5026; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -32768; Region: intergenic
    3. Chromosome: 4; Position: 2940188 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 20992; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -18906; Region: intergenic
    4. Chromosome: 4; Position: 2941611 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 22415; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -17483; Region: intergenic
    5. Chromosome: 4; Position: 2943033 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 23837; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -16061; Region: intergenic
    6. Chromosome: 4; Position: 2946056 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 26860; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -13038; Region: intergenic
    7. Chromosome: 4; Position: 2947480 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 28284; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -11614; Region: intergenic
    8. Chromosome: 4; Position: 2949613 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 30417; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -9481; Region: intergenic
    9. Chromosome: 4; Position: 2952813 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -6281; Region: intergenic
    10. Chromosome: 4; Position: 2954770 [Map]; Strand: c
      • AT4G05610.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -4324; Region: intergenic
    11. Chromosome: 4; Position: 2962947 [Map]; Strand: c
      • AT4G05612.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron14 (CDS)
      • AT4G05612.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron13 (CDS)
    Flanking Genome Sequence: 11-1615-1 - 3-prime edge 
    GACTAGATGT CATGTGTATG ATTGAGTATA AGAACTAGAA CCGCAACCGT 
    TTCCCAAAAG CTAAAGTAGT GTTTCCTTGT TAGAAGCTAC AAAGCCAAAG 
    ACTCATACGG ACTTCGGCTA CACCATCAAA GTTTTGAGAA GCAATAAGAA 
    GCT

AT4G05610.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein, putative retrotransposon-like orf - Arabidopsis thaliana,PID:g4309868
Link
InterPro Scan - TAIR

AT4G05612.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 183 Blast hits to 96 proteins in 39 species: Archae - 0; Bacteria - 19; Metazoa - 58; Fungi - 4; Plants - 39; Viruses - 9; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05612.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 137 Blast hits to 64 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 46; Fungi - 4; Plants - 30; Viruses - 8; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR