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11-1714-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17204014 [Map]; Strand: c
      • AT2G41250.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -1396; Region: intergenic
      • AT2G41260.2 - [+] show detail - glycine-rich protein / late embryogenesis abundant protein (M17)
        Distance: -2496; Region: intergenic
    Flanking Genome Sequence: 11-1714-1 - 5-prime edge 
    CTTTTAACGA GTAATATATA CAAGCGTTTA ACAACTCCTA TAGAAACCTT 
    TATTGAAGTG CAGATCATGT TTACACAGTA ACAGATTAAT TCACAAACTG 
    ATTTGGCCCC AAAAACATAA TGAATGTAAA GTAGAACNTT CTTAATTAAA 
    AGAAATAAAA CAGTAACAGC AGAAAGCATC TGGTTTGATT TCATATTAAA 
    AAGCAAAGTT CAGAAAATAT ATTGAATCTG TAAATCGTAA AAGTACTTAT 
    CAACGACGTT ACGTCGTTTT TGAACATTAA CTCAAAATTC TCCAAAATGG 
    GTCTAATTAT CGATTTATGT TTCCTTATCC ATCAGACTTT TTCTAATCTT 
    CTTTAACATC ATGATGTCTT ATTATATCAC ATACGTGATA CGTCTAAAAG 
    ACTCATTGTA TGTCCAAAGA AACACTAACC CAAATCTTAT TTTGTTCGTT 
    TTTCCATACG AAATCTACCA AAAAGCTCAT GAAATAAACC AAAACCATAA 
    AATTTTGTGG AACAAAACAT TTTCCTTTGG TGAATTCGGC CTTTTGTTAA 
    AAGTCAATCA AATTATGCAT AAAATGGCCC AAAACTATAT ACTCCTTAAA 
    TTTTGTGGCC CATATTTGTC AACACGTGGG CCCGTTTGTC AATTTATAAG 
    CCACGAATTT CTAAAGAGGT CCCTCTAAAA TAGACCAGTT CTTCATTGTA 
    TCCTTATATT ACTTTGCATG GCACATAATT G

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17203454 [Map]; Strand: c
      • AT2G41250.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -836; Region: promoter
    Flanking Genome Sequence: 11-1714-1 - 3-prime edge 
    GTTAAAAGTA TATTGGTCTG AAATTTTGGT GATGTGAATA GACATGAGAT 
    CAATAAATTT TGTTAAAACT CATGTGTTGA ATTAGTTTTT AAATAGTATA 
    CTATATTAGA TGAAGATACA GTGGCCCAGT GAGCCTGGCT TGATATATCC 
    ATATTGGTGA CGGCCCATAA ATTCTCTTGG TAGAGTTGGA CTATCCAATC 
    TGTTTTTGTT GTCGAATCCT AATTGATCAC AGACGTACAC TACACCTATA 
    TGCATTGGTG AAATATTGAC TCAAAAGTTT AAAAATCTTC CAAGAAAGAT 
    CATGGGATCG TACTAAACCA TCTAATTAAC CAAGTGGTGG TATAGAAAGT 
    GATTTTGTCG TCTTGGTCGA GACCCGTTCT CGATTCATAA AATGATAAAA 
    TATGATAGTT TGACAGTGAG TAGTTTTTTC TCAAGTTTTT CTTTATCCAA 
    CCTTTTCCAG TAAAACTAAC AGTTAAATAT TAAATAGATT TCGAAGCATA 
    TGATTTATTC ATAATGTTTA CTTACTTAGA AAGTTCATTT GGTAAAATAA 
    GAATAAGAAG AACATCCAAG GGTTCAAAAA GGATCACTCG GGAAATAGAT 
    GAAACGTCTT AAACGCCAGT AATGAAGATC

AT2G41250.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41260.2

Model type
Protein coding
Short Description
glycine-rich protein / late embryogenesis abundant protein (M17)
Curator Summary
Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.
Computational Description
M17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein (M10) / LEA protein M10 (TAIR:AT2G41280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR