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11-1799-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4430435 [Map]; Strand: w
      • AT1G12980.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1799-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATAAGAT 
    TCTTCCGGGA AAAACGACTC GTTGTTTTCG TTTTCGGAAT AAGAAACGCA 
    TGCCGTTTTC GATGCTGAGT AAGAAGATGA TGAGCCGTTG AAAGAGTTAT 
    TATACGGAGT CGTTTTACGA GAGGAACACG AGGCGTCGCC GTAAGAAGAT 
    AGACTGTGTA TTATAGATCC TCTGCGCTGC CGGTGCACCG TAAAAGTTTT 
    GGGTAGAGGA ATCTAACGGT AGAGAAGGAA GAGGACAACG AGCAGACGGC 
    GAAGATTTCT TGTTGGAAAA AGAAAACCTT GGTTCAGGCA TAATGACAGC 
    TGCCGGATAA GTAAAATTAG TACGAGCCTT TGCTCCACGA AAGGCACGAG 
    CCGCAGAGTC GTAAGCACAA GCGGCTTGTT CCGCCGTGTC AAATGTTCCG 
    AGCCAACGTC TCTCCTTCGA CATTGGGTCA CGTATCTCCG CCGCATATCG 
    TCCCCACGGC CTCCGGCGTA CGCCGCGGTA CCTCGTCGTG CTGCTGCCAG 
    CTCCGGCGAT GGTTACAGTG GTATCTTTTG AAGACAGTTT GCGGTTGCGG 
    CTAACAGGTG AGGCTGTAGG TTCAGTGAAG AATTTTGTGA GAGGATTAGG 
    GTCTGGTGAG TGGGTAGATT CGGTGAAGTT TNTNAAGGCT TTTTCCATTT 
    TTGGTTNTAG GGGTTTTGGT TTGNGGATAA ANGGAGGNGC TNNTGGNNAA 
    NANTAAGNGN TNNNCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4430537 [Map]; Strand: w
      • AT1G12980.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1799-1 - 5-prime edge 
    GTCGTTCAAG AGTTCTTGAA GAAAAATCGC GGCGTTCCTC CTTCTCCACC 
    AACACCACCG CCGGTGACTA GCCATCATGA CAACTCTGGT TATTTCTCTA 
    ATCTCACTAT ATACTCTGAA AATATGGTTC AAGAGACTAA GGAGACTTTG 
    TCGTCGAAAC TAGATCGCTA CGGGAATTTT CAAGCTAATG ACGACGGCGT 
    AAGAGCCGTC GCAGACGGTG GTTTATCGTT GGGATCAAAC GAGTGGGGGT 
    ATCAAGAAAT GTTGATGTAC GGAACTCAGT TAGGCTGTAC TTGCCGAAGA 
    TCGTGGGGAT AGCTAGATAT TCATCATGAT TATGTTTTGA GTTTTGGTAC 
    TATCGACTTA GTTTAAAGTT GCTACCTTTC CCAATGTTGG ATTTTAACTA 
    AATTATGTTT TAAGTTGAAT TTGCTAATAG GATTTCATAA TTATAATCAA 
    GGTTATAATA TATTTTCGTA GCTAATTAAA GTTTATATCC ACGTATTCTG 
    ACACATTACG CGCTTAATGA TTTAAGTTGT ATCATAATTT ATAATCACAT 
    GGTGGAACTT GTTAAGAAGT TACGTAACTC TTAAAACAGC TTTAAGCCTC 
    TAACATAGTC GTAATAGCAA GAAATAATAT ATATGATGAG AGATGAGTAA 
    AATAGGAAAA TTCCTTTGGT CAGCAATGTT GGTATCGACC TATTAAAAGT 
    GAATCTGCAA

AT1G12980.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.
Computational Description
ENHANCER OF SHOOT REGENERATION 1 (ESR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DORNROSCHEN-like (TAIR:AT1G24590.1); Has 5974 Blast hits to 5668 proteins in 251 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 5957; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR