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11-1806-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19594935 [Map]; Strand: c
      • AT2G47830.2 - [+] show detail - Cation efflux family protein
        Distance: -938; Region: promoter
      • AT2G47830.1 - [+] show detail - Cation efflux family protein
        Distance: -921; Region: promoter
      • AT2G47840.1 - [+] show detail - Uncharacterised conserved protein ycf60
        Distance: 0; Region: exon1 (CDS)
      • AT2G47844.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -358; Region: promoter
      • AT2G47850.3 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -705; Region: promoter
      • AT2G47850.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -738; Region: promoter
      • AT2G47850.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -738; Region: promoter
    Flanking Genome Sequence: 11-1806-1 - 3-prime edge 
    TCTGAGTGNN CTGCNTCTGG TANCCAGACA GGGGATTANA TCAGGGTTTG 
    GNGGAGAGAA AGGCACAGAG ACGCCATTCT TTTATTTTTT TGTTTGGGAT 
    TTTCGCTGTC TAGTCGGCAG TGTCGATTTG TTGACAANAA GAGCAAAAAA 
    AAGTAACAGC TCAAACGCTG CCGTTTTCGA ATCTAAAATT TGGCCCGCGC 
    ACACTAACAA CATAATTGGG CCGACTTAGC TATATAAATG GGCCTATATA 
    TGGTACTAGA GGGCTTCGTG AACAACAGAA GGTTTTTGTG GCGCCGACAA 
    ATGGGAAGCG GAAACGAAGA AATGTGATGG CATTGATTGA AGGCGAGTCG 
    AGTCGAGTCA NACTCGGTCA GAGCGAGTTG AGAGAGCAGT TAAGAAACAG 
    TANCAGGTAG AAATGACGGA TGTGTCCCCA CTTTCGGACC ANACCACTTT 
    ACTCCCCGAG TTANCAAGTG AAGTGAGAAA ACTGTCTGTG TGTCACATGT 
    NGGCCACTCG CGCGCTATCC CCGCCCAAGG ACCTTACCGT CATTTTGGTT 
    GGAAACTAGT AAAAAATTAG GGTAATTTAT NTTTTGTTNG TTGGTTTGNC 
    AAGTAGTATA TTTCCTTGNA ATNTTTTCCC TTTTNTGGGA TTGCTTTTAC 
    TTGGNNGACC NNGGACCATG AGAGACCAAA AATAAATCTC CCANACAAAT 
    TTATTCCACN CTTCTN

AT2G47830.1

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9484 Blast hits to 9472 proteins in 2416 species: Archae - 234; Bacteria - 7791; Metazoa - 296; Fungi - 408; Plants - 276; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47830.2

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9392 Blast hits to 9378 proteins in 2385 species: Archae - 234; Bacteria - 7700; Metazoa - 297; Fungi - 408; Plants - 275; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47840.1

Model type
Protein coding
Short Description
Uncharacterised conserved protein ycf60
Computational Description
Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47844.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.2

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1403 Blast hits to 803 proteins in 136 species: Archae - 0; Bacteria - 13; Metazoa - 242; Fungi - 122; Plants - 888; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.3

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR