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11-1835-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1349483 [Map]; Strand: w
      • AT1G04800.1 - [+] show detail - glycine-rich protein
        Distance: -197; Region: promoter
      • AT1G04810.1 - [+] show detail - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
        Distance: -697; Region: promoter
    Flanking Genome Sequence: 11-1835-1 - 5-prime edge
    GATATAATTG CTGTTGAGTA AAAACAGTTA AAGATGTTTC ACCGGTCACT 
    GGACAAGTTT TATGTTTCAT TGTCTGCCCA ACTGCCATAT TGATCTCATC
    CAACACAAAG AGAAAAATAT GATGCAAATA TAGTTGAAAA ATTGAAGAAC
    ATATGACACC AATTATTATA TACAGTTCCT TGAATTATAT TAATCATACA
    TTCATATCAA TTATATTAAA ATTTAATTTG AAGGTTGTCC AGGTTTCAGA
    GGGCAATAAC TAAAAATGAA AATGTTTCTG CATGTCTATT CATAATTTCA
    TATTAAGTGA AAACTCGTAT GGTCTAAGAG AAAATATTTA CTAGAAAATA
    ATTCTGACTT GATAAAAGAT GTAGTCGCTT TATGGGTTGG AGGACAGGCC
    ATGTCAATCT ATGGAATATT GAACTATCTA TATAAACCCT AAAATGTGAT
    TTCATTTATT TGTGAGCTTT AGCTTTTTAG GTGTCATCAA TCAATGATGT
    AAACTAGAAA CTCATATGCT ATACTTCCAA ACAAACCAAT AAAGTTTTTA
    TTATGGGCCG CTAGATTGGT CCATTAACAC TATAAGATAT ATAGTCTGGC
    CCATCATTAA ACCCAATTTT GTATTCCGAC TTTATGATTT TGTTTGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1349364 [Map]; Strand: w
      • AT1G04800.1 - [+] show detail - glycine-rich protein
        Distance: -78; Region: promoter
      • AT1G04810.1 - [+] show detail - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
        Distance: -816; Region: promoter
    Flanking Genome Sequence: 11-1835-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGTCCA TGCACATTGA CGAAAAGTGC 
    TTATGCTATC ACGATCTCTC TCTAAGTCTA TATATATACT GCTCATGCAA
    GAAGCAATTT CGTATCAAAA CATCCTCTTC CAATAGCTTC TAATATTTTA
    ACTACAAACA TTTTAAGTTT CCACTAACAA TGGGTCTAAT CGCCGGTAAA
    GTGTGTGTGT TTGTTTTGGT GTTTGCTTTG GTCACAGATT TTACTATGGG
    AGAAGCAGAG TTTGGTGATG AGAAGCCCTT GTTTCCTCAC CCTCACCCTC
    ATCCTCTCCT CCACAAGAAG GGCTTTAAAA AAGAATT

AT1G04800.1

Model type
Protein coding
Short Description
glycine-rich protein
Computational Description
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 109132 Blast hits to 26905 proteins in 1855 species: Archae - 173; Bacteria - 37969; Metazoa - 32319; Fungi - 6881; Plants - 10265; Viruses - 1569; Other Eukaryotes - 19956 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04810.1

Model type
Protein coding
Short Description
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Computational Description
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (TAIR:AT2G32730.1); Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14; Bacteria - 33; Metazoa - 390; Fungi - 382; Plants - 143; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR