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11-1910-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3017431 [Map]; Strand: c
      • AT5G09730.1 - [+] show detail - beta-xylosidase 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1910-1 - 3-prime edge 
    GGTGTAGTGT TTGCAGCAAG CAGCGACTTT GAGACGGTTA GGATCTCCAC 
    CGTCAGTCTC CTGAAGACCT TTAACGTAGG CCACTGCAGT ATTTGCTTGA 
    GAGTGTTGGG TCCTCGCCGG GAGTCTCTTG TCCTCTTCCC CATCTCGGGT 
    CCCGGAATAT GTTCACATTG GGTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3017380 [Map]; Strand: c
      • AT5G09730.1 - [+] show detail - beta-xylosidase 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1910-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAC ACCGCCTATG ATATTGACAA TTGGAGAAAT 
    GTCCAGCGTT TCACTTTCAA CGCTGTGGTA AGAAGAAAGA GTTTTTTTTT 
    TGGATTCTTT GAATATTTTG TAACCTTTTG TTATTTGTCA CACCTAAATA 
    CATTTCAATG TTTCATTCTG TTTTTCGNGT TATGTNGGAT TAGGTAAACC 
    AACAANATCT GGCTGATNCG TTTCAACCAC CGTTCAAAAN CTGNGTGATT 
    GATGGGCATG TTGCTAGNGT CATGNGTTCT TACAACCAAG TTAACGGTAA 
    ACCAACATGN GCCGATCCTG ATCTGCTTTC CGGGGNGATC CGCGGACAAT 
    GGCAGCTAAA CGGGTAAGGT TATTTGGATC

AT5G09730.1

Model type
Protein coding
Short Description
beta-xylosidase 3
Curator Summary
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational Description
beta-xylosidase 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9260 Blast hits to 8072 proteins in 1198 species: Archae - 63; Bacteria - 5600; Metazoa - 16; Fungi - 1569; Plants - 515; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).
Link
InterPro Scan - TAIR