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11-1919-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25368570 [Map]; Strand: c
      • AT1G67680.1 - [+] show detail - SRP72 RNA-binding domain
        Distance: -44; Region: promoter
      • AT1G67690.1 - [+] show detail - Zincin-like metalloproteases family protein
        Distance: -516; Region: promoter
    Flanking Genome Sequence: 11-1919-1 - 3-prime edge 
    AATTGGAGTG TCTTCAACGG ATTTGATGAT GACATTTCCT AAGACAAATT 
    AATGGGCTTT TTATATGGGC CTTTCACATC TCATTTATGC TCATGATCCA 
    ATTATCTTAA GATCTTTTAC TTGAAAGTAG AAAAGAGACA GTTAAAAAAA 
    CCATTACGGC TCATCCATCT AAACTTTAGA TTGACGATAA AGTGAAGCGG 
    AATCAATCAG GAGCAACACG AGCTAAGTCA CATACTTGAC CTTCTAGTAC 
    ATTGCTAGCT CATAGCTCAC GAACACATCA AGCT

AT1G67680.1

Model type
Protein coding
Short Description
SRP72 RNA-binding domain
Computational Description
SRP72 RNA-binding domain; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP72 subunit, RNA-binding (InterPro:IPR013699); BEST Arabidopsis thaliana protein match is: SRP72 RNA-binding domain (TAIR:AT1G67650.1); Has 655 Blast hits to 637 proteins in 232 species: Archae - 21; Bacteria - 65; Metazoa - 237; Fungi - 154; Plants - 42; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67690.1

Model type
Protein coding
Short Description
Zincin-like metalloproteases family protein
Computational Description
Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G51540.1); Has 5194 Blast hits to 5176 proteins in 1382 species: Archae - 6; Bacteria - 3154; Metazoa - 337; Fungi - 406; Plants - 147; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink).
Link
InterPro Scan - TAIR