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11-1920-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22170211 [Map]; Strand: c
      • AT1G60110.1 - [+] show detail - Mannose-binding lectin superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-1920-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA TGTATATTTT TCTAATGCAA TCAAAACGGC 
    CATCGTCCCA AGAAGCTCCT CCATCACCAC CTTTTGCTTC TACTTTTTCT 
    CCGTCAGGAA GAGGTGGTAA CGGACAGAAA TGTGCTCCAA GCGCATAAGT 
    ATAATAATTG GACCGTCCAA GGAACCCAAC AACGCCACAA CCTTTGCTCT 
    GAAGCACAAA TTTTTTAGTA GCCGGACTTC CAAATGTTGA AGAAGTTCTC 
    CCTTTTGATG TTTTGAAAGT CAATGACGCA ACTGTTTTGG AAGTCATTGA 
    CGGAACTGGC GAATCATTTT GTTTTGATAT AGTCCCCTCC ACAGATGTGA 
    TAAATTCATT AGGATAGTCC ACCACAAACT GCCATACAAA AAAGGCTTTG 
    TAAAAATCTT TTAAATAACA CACATGTACG AGTCCACGAA TACTAAGAGT 
    TGTAGAAATT ATGATTACCT CTCCTCTTTC TATGAAGGGT GCAATCATTA 
    TTCCATGCTC ACGCTTTTCC ACTTTGCCTT TGTTGTCATA GTCGACCTCG 
    ACACAATATA CAGTAGCGCC ATCATAGTGA ATGTAAACAT TTCTTATGCC 
    ATCAAAAGTA CCATCATCCC AAAGATCAGC CAAAGTAGTA CCAACTTCCA 
    GTTTTGTAAA AGGAGAAGTT GTGAAATATG CTCCAAGAGA GTTTAGATTC 
    TTCTCAGCAT ATCCATGAAA CCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22186089 [Map]; Strand: c
      • AT1G60150.1 - [+] show detail - transposable element gene
        Distance: -2946; Region: intergenic
      • AT1G60160.1 - [+] show detail - Potassium transporter family protein
        Distance: 2025; Region: intergenic
    Flanking Genome Sequence: 11-1920-1 - 3-prime edge 
    TTTTTGATCA ATCATCCTTT TTTTGGGACC GATAGGTATG GANTT

AT1G60110.1

Model type
Protein coding
Short Description
Mannose-binding lectin superfamily protein
Computational Description
Mannose-binding lectin superfamily protein; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G60130.1); Has 2034 Blast hits to 667 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2032; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 28% identity and 3.6e-07 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT1G60160.1

Model type
Protein coding
Short Description
Potassium transporter family protein
Computational Description
Potassium transporter family protein; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: K+ uptake permease 7 (TAIR:AT5G09400.1); Has 3447 Blast hits to 3411 proteins in 1044 species: Archae - 13; Bacteria - 2434; Metazoa - 1; Fungi - 101; Plants - 776; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR