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11-1965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 45388 [Map]; Strand: w
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -18; Region: promoter
    Flanking Genome Sequence: 11-1965-1 - 5-prime edge 
    TNACTCATTA CACGAAGTGG GGACGGCTTC TTTCGACATT ANGGTATTGC 
    CCATNGTTTA AATACTCAAG TGGATAAGTA AACTTATAAT CACCACTAAT 
    TATATATAAG TATATTACTA ATTAATCGGN CTAATTAAGA TACCGTCTAA 
    ATGTCGTTGT CCACATGAAA TTTCTATATG TTGCGTTCAT TTCATAGATT 
    TAAAATCGAC AAAGCTAGAA GATAAATTTT CAAAATGAGA CCTCACATCT 
    TCTTTTCACA TTGCCTTTAA TGAGTTCAAG ACAAAATACC CCGTTTCATG 
    CATTAATGTT CATACTTGTT ATATTCATCA ACAATATACC AGTACTATGC 
    AACATCAATT AATTATAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 45272 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2075; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3; Region: intergenic
    Flanking Genome Sequence: 11-1965-1 - 3-prime edge 
    NTGAGTTATG GGGGAGAGAT CCTGTTNAAT CGTCAAATAA AACAACTTAN 
    GAACTAGAAA TTGACACCAA AAATCATAAA GAGAACCGTT GAANAAGTCA 
    TTTATCCGTA TCCAGCGTCA TATTTCCTAG CTAAGATCAA ATCAAGGCCG 
    TTGAAAGGGC TTGTAAGAAA ATGTCGAAGA AACCGTGGGG TTTAGAAGAA 
    AGACAAGAAA TAGAAGAACA ATGATGTTAA ATTGCCTATT TTGGTGTATA 
    GGAGTTGTCA AAAGAGGAGA GAGAGAAGAA AATTAGGTCA AAATAATGAG 
    CACTAAAAAT GGAGACATGT GTTGAGTAAC TATTACAAGA GCGACTTATG 
    CTTCCTTATG GCAATGATAT CCAAACCAAA GTGCAACGCT CCTTTTTTGC 
    CCTAATTTCG TAAAGTCTCT CTCCTTCTTC GTCCTNAGGA AAAACCCTAG 
    AAATTTAATC CCTTGTTCTT GATCTTGCTT TTTGAGTAAC CATGATTTTG 
    ACCACACACT ATTTCTTCTA TCTTTTGTGG TCTATAGGAT TTTGCTTTAT 
    ATGTGTTTCT TGTATTGCTC CGTACGTACG TATACGAATT TAAATGGTTA 
    TAACAAGGTT TATATAAACT AGCACAAATG AGTCCATGAA ATTTGTTAGC 
    GAAAAANGTA AAAATTTTTT GAGTCTTTAA ACGGCAATAT ATATAATTTT 
    GCTGCAAAAC CTTAGCTTTT AATCATNATN TAANGANATN TCNT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR