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Mutant Lines
11-1993-1

11-1993-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 2262241 [Map]; Strand: c
- AT1G07360.1 - [+] show detail - CCCH-type zinc fingerfamily protein with RNA-binding domain
  Distance: 0; Region: exon2 (CDS)
- AT1G07370.1 - [+] show detail - proliferating cellular nuclear antigen 1
  Distance: -899; Region: promoter

CCTTTCACGG TGTTTAGGTG GCGACCTGGC CGGGATGCTA GATACAAGAA 
AACCGAAATT TGTCAGACTT GCTGCAAGCT GAAAAATGTT TGTCAAGTCT 
GTCTCCTGGA TCTTGAGTAT GGTCTTCCAG TTCAAGTCAG AGACACAGCA 
CTCAACATTA GTACTCATGA CTCTATCCCT AAAAGTGATG TCAACAGAGA 
GTATTTTGCT GAAGAGCATG ACAGGAAGGT ATGATCATGT TCGCACTCAC 
GGTTATATTT CAGCATTTGT TGGTTTGAGA ATTTTGAAGA CTTACTCTAG 
CTTTCTCATG GTGGCTTATC TAAGTGATTT TGCTTTTTCT GTTATGTAGG 
CTANAGCTGG ACTGGATTAT GAATCTTCAT TCGGCAAGAT GCGACCCAAT 
GATACTATTT TAAAGCTAN

3 prime edge [+] show sequence

Chromosome: 1; Position: 2440460 [Map]; Strand: c
- AT1G07890.3 - [+] show detail - ascorbate peroxidase 1
  Distance: 795; Region: intergenic
- AT1G07900.1 - [+] show detail - LOB domain-containing protein 1
  Distance: -2162; Region: intergenic

ATTGAAAACG GTAGAGGTAT TTTACAGCCT GTAACATTAC TGAGCTCCTC 
TTTCATTCCG TGTGGGTCTC GTTTGTTTTA TGTATAATCC TTATCTTACT 
TTAGCCTAAA AAGAAATTCA AAGCAACTAT AGCTTCAAAA GAATAAAAAT 
ACTATAATAT CAAAAAGACA ACCAAAAAAA AACAAAAAAA GAGAGAGGTA 
ATGCTATAGA TTTCATCTAG ACGTAATAAT ACATTTTTCA AAGATGCGAC 
GACTTTTANA AAAATACATA GTTACTTANA TAACTTTGAA AGTATCCAGA 
AATCANAAAT GTGGATTTTT TTTNGTNCTT TTTTTCTACA TCGNCGGATA 
AATTCTGAAT TTAANAACNG CGTAATTTCA NACATATNTN TGCATGACTC 
GTNGAAATCA AAGNCAANGA GTCAAATNTA TCATTTATTC GGTNCNCTTA 
GGTTNCATCA TCANATTAAA TTTGAGCANA TGGTNGTAAT CAATAATCCC 
TTGCCCGNGG CTTGGTNTAC GTCCATTGGG CAACCTTTAT GTTTTTCCCC 
TTTCCGGAGG GAATCGCTTA CAAATTCTTC NATCGATNTG ATNGATTCTC 
AANGACCAAN NTTGNTTNGN GGAATTNGNA AAAAAAAAAT NGGNTTGNCC 
GNGGGNTNTN AACTTGGTTT TTGGACCANC AANCAAANNT NCCCNNNAAA 
TGNNNNNGNT GGCCAATTNN CTTTTTTTTT TNNNNNNNNA ANGNNNTNNG 
GGCNNNCNNN NNNNNAAANN NANNNTNNNN GGGGGGGGGN NNNNNTNNNN 
NNCCCCCNNC CNNC

AT1G07360.1

Model type: Protein coding
Short Description: CCCH-type zinc fingerfamily protein with RNA-binding domain
Computational Description: CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1); Has 18250 Blast hits to 13471 proteins in 794 species: Archae - 12; Bacteria - 1319; Metazoa - 6997; Fungi - 3518; Plants - 3570; Viruses - 267; Other Eukaryotes - 2567 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07370.1

Model type: Protein coding
Short Description: proliferating cellular nuclear antigen 1
Curator Summary: Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.
Computational Description: proliferating cellular nuclear antigen 1 (PCNA1); CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cell nuclear antigen 2 (TAIR:AT2G29570.1); Has 1857 Blast hits to 1845 proteins in 456 species: Archae - 391; Bacteria - 0; Metazoa - 315; Fungi - 169; Plants - 159; Viruses - 71; Other Eukaryotes - 752 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07890.3

Model type: Protein coding
Short Description: ascorbate peroxidase 1
Curator Summary: Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Computational Description: ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07900.1

Model type: Protein coding
Short Description: LOB domain-containing protein 1
Computational Description: LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR