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11-2011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1724563 [Map]; Strand: c
      • AT1G05750.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT1G05760.1 - [+] show detail - Mannose-binding lectin superfamily protein
        Distance: -77; Region: promoter
    Flanking Genome Sequence: 11-2011-1 - 3-prime edge 
    ATAACATTAA TATATATACA TGTNGAGATT CAAAGTTCTC TAAGTCTGAA 
    GTCTCAGATT GGAATATGCC TATCCAATTT GATATTAGTA ATTCATCTTA 
    CGATTCATTG NTTTATTGCA TTTATCTTTG CTTCTTCTCT CCATTACCCA 
    ATTTGTTTTA ATGAAATGAC TAATAGATTT GTTACTAGAG ATTCTTTAAG 
    ATAATGTTCT TATTTTGACG CCTCGGATTG GAATATTCGT TTACAATCTT 
    GCATAGCTTC ATCTAGCAAT CTATTNCCTT TCTTTCATTT GCTTTGACAA 
    AGAGTCGAAT CTTGAAAGAA TGTATNGNCG GATGAANATT ATGTAATGCA 
    ATGATTATCT TAGTCTGNTA AAACGANNNA CT

AT1G05750.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.
Computational Description
pigment defective 247 (PDE247); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1; Bacteria - 18; Metazoa - 75; Fungi - 77; Plants - 41230; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05760.1

Model type
Protein coding
Short Description
Mannose-binding lectin superfamily protein
Curator Summary
Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance
Computational Description
restricted tev movement 1 (RTM1); FUNCTIONS IN: sugar binding; INVOLVED IN: response to virus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05770.1); Has 829 Blast hits to 525 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 828; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR