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11-2080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1005469 [Map]; Strand: c
      • AT4G02290.1 - [+] show detail - glycosyl hydrolase 9B13
        Distance: -216; Region: promoter
    Flanking Genome Sequence: 11-2080-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATACAA GGGCTTATNT TCAATATTTT TCACAAACCC 
    CTCAACTATT TATGCTATTC TAATTTTGGA CAAAAACTCT TCAAATTAGT 
    CATTTTTTTC AAGCTACATC TTTTTTCTTC TGACACAATC CAATAATCTC 
    AGCTATATCT TGTTTTACCA TATGGGAAAC ACAAAAAAAG TAGTCAAAAA 
    ACTTTTTAAC TAGTCACAGA GCAAGGAGAG AGCGAGAACC ATTTTTTTCT 
    CTATAAAAAG CTGAGCCACT TCCTCTGTTT CCCACAAAGC AGCTTCTGCA 
    ATCTATTCGT NGGTTGGTTA ATAGAAGCTC TCTTTCTCTG TCTGTCTTTC 
    TCTCTCAGAG AAATGGCTCT TCTTCTAGTT TCTTCTTCCT CCTCCTATGC 
    CCTCAGAGTC ACCATTTTCT TGTCTTTCTT CTTCTTTCTC TGCAANGGCT 
    TCTCTTACCC TACTACTTCT TCTCTTTTCA ACACCCATCA CCATCGTCAC 
    CACTTGGACA AGCACAACTA CAAAGATGCT CTCACTAAAT CAATCCTCTT 
    CTTCGANGGC CAAAGGNCTG GGAAGCT

AT4G02290.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9B13
Computational Description
glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR