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Mutant Lines
11-2085-1

11-2085-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 8957123 [Map]; Strand: c
- AT1G25500.1 - [+] show detail - Plasma-membrane choline transporter family protein
  Distance: 0; Region: exon2 (CDS)
- AT1G25500.2 - [+] show detail - Plasma-membrane choline transporter family protein
  Distance: 0; Region: exon2 (CDS)
- AT1G25500.3 - [+] show detail - Plasma-membrane choline transporter family protein
  Distance: 0; Region: exon3 (CDS)

GGTGCTTGGA CTCAATAGGT TTAGAATATC ACGATAGGTT AAACATCGAT 
AGGTACACGT CAAGGGTTCT TGGAGAATCA TAAAGGTCTA ACAGAGGATT 
ACTGGCCTCT CTATGCTGTT GCNTGGTGGC ATTGGAGTCT TTATCAGTTG 
GGTTTGGTCA TTGCTGCTTG GCTCTTACGC CAATGAGATG ATGAAAGTTT 
CGGTTCACAT CTTAACAACC TATCTAGCTG TAGTTAGTGT ACTATGTTTC 
TGGTGCAGAC TGTTCTTTTG GGGCGGTGCA TTCGCTGTTG GATCTCTGTT 
GCAGTTCTTG TATGTTATTT CAGTTATAGA CAGGTGCGTC CGAGGTTGAA 
CTGGTTGAAC TATGACTGAA CCCCTATGGT CAAATGGCAA CAACTTTTTA 
GTTCTGATGA TTTGAGTTGT TCATGTGTAG ACTTCCTTTC ACAATGCTGG 
TCCTACGGAA AGCGCTGAAA TTAGTCTGGG GACTTCCTAA NGTGATAATG 
GTGGCACATG CTTTTCACAG TAGTNATGCT TTTGGGGATG CTCTATGGTC 
TTTTGGAGCA NCTGGGGTNG NGGCNTCNAN CATGGGCCAA TNAGGACNAN 
TGGGGCTTTN TTNTGGTNAA CTGGCAAAGN NNNNCTTNNT NANTAACNGG 
ANCNGGNNAN TGNTTTAANC NCNNNAACNN AACATNTTNA AATTTCCNNC 
CCNGGCNNCN AANAAANANC C

3 prime edge [+] show sequence

Chromosome: 1; Position: 8957197 [Map]; Strand: c
- AT1G25500.1 - [+] show detail - Plasma-membrane choline transporter family protein
  Distance: 0; Region: exon2 (CDS)
- AT1G25500.2 - [+] show detail - Plasma-membrane choline transporter family protein
  Distance: 0; Region: exon2 (CDS)
- AT1G25500.3 - [+] show detail - Plasma-membrane choline transporter family protein
  Distance: 0; Region: intron2 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
GCGAGCACAA ATCCCAAACA AATCAAGTGG ATCACAAAGA TGGCTGACCA 
GAATACATCA TGCCAATGGC GGGACTCACG CACAACGGCT CGGTTTCCAT 
CTCCACTCCT TCGACTCCGC TGAAGACTCT GCAAATCAAA ATGAAAACAT 
TGATTCATTC AAATTACATC ATGGACGAGT CTGAGACCTA CAAAAAGCTA 
TGCTTTAACA TAAGCAACGA CTCTGAAACT TCATATCAGT ACAATGCAAA 
TACATAAAGT GATCAAACTC ACACAAGACA CATTTTCTAT CAAAAAGAAA 
AAACTTTGCG ACTGACCCGT GATTAAAGTT ACAAAGCCAA AGTAACCAAT 
CGCTCTTAAC ATGTAAGGAA CAAATCCAGA TATGAGTTCA TCAAGATCAC 
ACTCGTAAAG GAAATGACTT TATGTTCTAA AAAGCAAAAC CCAGAAAGGG 
ATTCTCATAA CAACTTCGCT TGTACAGAAA TTATAAGAGA AAGAGATTCG 
TGCCCAGATC GAAATTGAGT AAGGGTGGAG AACCTGGTCG CCGGAGGAGA 
TGGAGGCGTA ATCAGAGGAA GGAGAGACGC TGTTAGTGGA GTCACTCATG 
ATGGAGTAAG AAGAGAAGAT TCACTCACTG ACCAAAACCA AATTTCATGG 
AAGCATCTTT GATTAAATAT CACAAGAGTT GGAAAGAGAG AAAAGTGAGG 
GGAGATAGTC AATGAGAGGA AAAANAAAAC A

AT1G25500.1

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25500.2

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 973 Blast hits to 970 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 169; Plants - 182; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25500.3

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR