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Mutant Lines
11-2088-1

11-2088-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 18663511 [Map]; Strand: c
  - AT2G45250.2 - [+] show detail - Integral membrane protein hemolysin-III homolog
    Distance: 482; Region: intergenic
  - AT2G45260.1 - [+] show detail - Plant protein of unknown function (DUF641)
    Distance: 1019; Region: intergenic
Flanking Genome Sequence: 11-2088-1 - 3-prime edge
```
AATCATACCC CACTTTTACC AATCGTGCCA TTTCACAGCC ACTCTCACCC 
ATGTCGCGTT GAGCGCGTGC CTACGAGTTC TAAAAGGGTT AATCCACAAA 
AATCATTCCT TTTAGGATC
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 17944181 [Map]; Strand: c
- AT4G38290.1 - [+] show detail - Haemolysin-III related integral membrane protein
  Distance: 134; Region: intergenic
- AT4G38300.1 - [+] show detail - glycosyl hydrolase family 10 protein
  Distance: 375; Region: intergenic

CNGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCGG AGCTCTCTCA TTGGCTAAAA AAATAAAAAT 
AGTATGGGAG CTCCTCCTCT CATATATTGA AAACAATAAT AAACAGTGTA 
TCTCTCATCT AAAAATATGA ATCCTTCAGC TTCTTTAACC AGTAATATGT 
AGATTAACAA TATGAATCCT TTTGATGAAT AAAGGAAACA ATTAAACGTT 
TGATTACAGA TAAGACTTTA CATAATCCAA CTTCTATATG AAGCTACTAC 
AAACAAGATT TAAAACATCA AAGAATCCAT CTAATCTTCA TCTTCAACAT 
CCTTCAATAT CTCTCCACTT AAGATACACT AGCCCAGCTC TATAGTGCGT 
GAACGCACCA GCAACTACCA GAACATGAAA CAACTGATGG CTATGTCCTG 
CTATATCGAA TTTACCCGGC ATCCATCTCT CTGGGATC

AT2G45250.2

Model type: Protein coding
Short Description: Integral membrane protein hemolysin-III homolog
Computational Description: Integral membrane protein hemolysin-III homolog; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38280.1); Has 122 Blast hits to 120 proteins in 32 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 9; Plants - 83; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G45260.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF641)
Computational Description: Plant protein of unknown function (DUF641); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT4G34080.1); Has 407 Blast hits to 396 proteins in 44 species: Archae - 0; Bacteria - 10; Metazoa - 42; Fungi - 9; Plants - 286; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38290.1

Model type: Protein coding
Short Description: Haemolysin-III related integral membrane protein
Computational Description: Haemolysin-III related integral membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 1144 Blast hits to 1144 proteins in 198 species: Archae - 0; Bacteria - 18; Metazoa - 607; Fungi - 265; Plants - 172; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38300.1

Model type: Protein coding
Short Description: glycosyl hydrolase family 10 protein
Computational Description: glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G38650.1); Has 1908 Blast hits to 1902 proteins in 430 species: Archae - 10; Bacteria - 1128; Metazoa - 20; Fungi - 351; Plants - 265; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link: InterPro Scan - TAIR