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11-2147-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 267393 [Map]; Strand: w
      • AT1G01710.1 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: exon18 (3UTR)
      • AT1G01720.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -937; Region: promoter
    Flanking Genome Sequence: 11-2147-1 - 5-prime edge
    GGTGGAATCG AACAAGAATC TCGAGATAGC TTGATTCAGC TCAAAGAAAG 
    AGTGTACGAG AACATTGCCA CAGTGCCTCT AGTTGTAGAG AGAATGCGAG
    AGAGTAAAGA GAGAATCGAC AAGTCCATTT CTTTCAATGG AACTACTATG
    CACCCGGCTT TCACAAGGCG GAAAGCTAGC TAACTGATCA GTTTCTACTT
    CTCCCTATTG GCTTTACCAC TCAAAGAAAG CTAATGCATA GGAGGAGATA
    TGGCTGGTAT TTCTTTGTAC TATATTAGTA TCAACCAACA TTTCTCGCAT
    TTAGAATAAG AGTATACCAT AACCTCTGTT TTGATTGTGT TCTACATTGA
    AACAGGTCTT TCTCTGATTT TAATATGGAC TCTTATAGAA TCTTGGGCTG
    ATTCTACACC CTGTATGTAT ATGTAAGAAT CACATAATCA GATGGTTGCA
    CAATTGTCAA GAACACCCAA ATCCAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 246912 [Map]; Strand: w
      • AT1G01670.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -924; Region: promoter
      • AT1G01680.1 - [+] show detail - plant U-box 54
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 11-2147-1 - 3-prime edge
    TTTGAAAACG GCAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCAAAA 
    CCCTATATAT AATTTAGTGT CAAGATTACC AATTGAGATT CTTGTCAGAG
    TAAAACCAAC AGGGTTGGAT ACTAGAACCT GAGGAATCAC CANNAGAAAG
    GAAGGAAGGA AACTATAGAG AAATCAAAAA GCAATGAGAG CGATGAAGAC
    CCACNTCTCG AAGATTTCAA GTGTCCCATT TCAATGGTTA GGATATTTGA
    AGTATATNNT ATATATGTCT ATATNNNCNN GNATTNNCNG CTCTNGACAC
    AANNCTACAC TTGNCNCACA TNNTCCNCNC TGNTGCTCNA TNANATNTGT
    GNTGTTGNGA GANANNGNGC NANACCCTNN TGTGGCNGCN NNTGGTCCCN
    CCCTACGNNG CATANGNNTT NCCNNCCCGG NCCAANNNNN ACNCGNTNCC
    NTNNNNGCNN NNNNCNNNNC NACTCNTCCN CTTNCNNNAA NNNNNCNNAT
    TNNCTAANNN NNTGTNGTTA GNNNNCGNAT NNNNNNTNCA TCCAGNCNNN
    TCNGTCNANN TGTNTAGTCA TNCCNNNNTN TACNTCNACA CCCTAANTTN
    NTTATNNTTG NCGNNNNTTN ANTTTNATAN TCGGANACCA NATNNCCTNN
    NTNNNNNANA TNGNTNTCCT NNGCNNNNNN GNCCCTTAGN TNTNNNTCCN
    NTGNNTNCTT TGTTTCCNCN CTTAGCNCAC NNTCGTTGCN GNCNAGCGNA
    GCANNNACNC NNGNACCNGN NACGNNACGG NGGCCNNAAN ANGATNNNNA
    GAACNGNNCN AANNNNTTCC NNTGGTN

AT1G01670.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4; Bacteria - 101; Metazoa - 863; Fungi - 177; Plants - 1725; Viruses - 10; Other Eukaryotes - 977 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01680.1

Model type
Protein coding
Short Description
plant U-box 54
Computational Description
plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01710.1

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0; Bacteria - 1940; Metazoa - 444; Fungi - 348; Plants - 71; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01720.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator Summary
Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.
Computational Description
ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR