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11-2173-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30308508 [Map]; Strand: w
      • AT1G80620.1 - [+] show detail - S15/NS1, RNA-binding protein
        Distance: 1091; Region: intergenic
      • AT1G80630.1 - [+] show detail - RNI-like superfamily protein
        Distance: 188; Region: intergenic
    Flanking Genome Sequence: 11-2173-1 - 5-prime edge 
    NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTACCATCT GATGGCTGAT GTANCTCACT GCCAAGCCTT 
    TTTAACAGTC TCTGATCCTG AGGATATGAT TCGCTACTTG AGGTATAAGA 
    CCCAAAAAAT GAAGAGGGAG TGATTGCTAT TTGCCTTGGT GACTTGTTTT 
    CATGTTTTTT GTCTTCACTT TTTGTTACTA CTCTTTGCTT TGATTTGCAA 
    TGTAGTAGTG CTGGTTACTT CTATCATTGA ATAAGAAGAT GGCTGAACAT 
    TTGAATAAAA AATCAACGCA AGCT

AT1G80620.1

Model type
Protein coding
Short Description
S15/NS1, RNA-binding protein
Computational Description
S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G15810.1); Has 7972 Blast hits to 7972 proteins in 2715 species: Archae - 0; Bacteria - 5433; Metazoa - 85; Fungi - 116; Plants - 310; Viruses - 0; Other Eukaryotes - 2028 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80630.1

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR