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11-2239-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309719 [Map]; Strand: c
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -610; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -610; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: -372; Region: promoter
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -597; Region: promoter
    Flanking Genome Sequence: 11-2239-1 - 5-prime edge 
    CATNAAATGN NGAGGGAGGG GACGNCCGCA ACANTANNAA GGGGCGNGAT 
    TAACTATNNA ACTCACTACC ATATANCCAA NTGATGGACT ATNNNCCCNN 
    TGATTCAAAN NATCGCNCGN TNACACGTTC ACTCATAATC CCTTTGTGTA 
    CTGGCTTTCA AGCCAAGTAT GAACACGTAA GCCGACGACT TACATNTTTT 
    TTTTTTTNTT TNGNGNNCCC ANCNCCNNNN AANANGGNNN ANNNTCNNNG 
    CGCTNNNTNT NNTNTANNCN ANCCCCCNNN AAAAAANGGA AAAAANNNAN 
    NAAAAAGGGG NCATAGGAGG NNNTNNANTA TGANCCCNNG GGGNTNTTNG 
    NGAANCNGAN ATNAGGGGCC NGANNNCNAA NTGNGNNNTA NANCTTTNNG 
    GGTATNAANN GAAAANGAAN AAGAGNAGCC GNGATACNTA AAACACNTNG 
    CNAGNNGNAG GANCNNAGAG NGGGTNNTCC NNNAATGGTN ANNGCGNGAA 
    GGTTCANACT NTTNTNGNTC NGGGTNNAAN GCNNCGGNTG AGGAAAGATT 
    NNTNNNAAAT NATTNCNNCG CANGCGGTNN NNAAACGGNC CCNGNNNNGC 
    TNCTAGNACT NTTANGNGAG NNAATNTNAG NNCNNCATAG NNAAGGGTNN 
    NGNATGAGGA ANAGNCNANT NNANNANNCG TNCATNTCAN NGNTTNNNCG 
    TTNCTNNCGT GATTCNNGCN NACNATNTCC ANTCNCCGGN NGTNGNTNNA 
    CCTTTNCCNA NGCCNCCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309788 [Map]; Strand: c
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -679; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -679; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: -441; Region: promoter
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -528; Region: promoter
    Flanking Genome Sequence: 11-2239-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AGTCCACCTA CCCCTACCGG CGGTGGAAGC TGCCTGCATT CCTCGTCCTT 
    CTTCTAAACT ACTACCCGTT TTCTTTTCTT TTTTTCCTAT TTAAAACTTT 
    CACGGCTTTT TTTTCTTTTT CTTTGTATAG AGTAAAGATT ATTGCAAAAT 
    TCCCACGTCT TANATGAAAA TTTGCACCTC ATAAGACTAG ACTTGTTCAT 
    TACGTGTTCC ATATTCTGGT AGGCAAATAT TTTTATCATT CAAACTCTTC 
    TATAAGTGAT ATTAATAAAA AGCT

AT1G01880.1

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01880.2

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2).
Link
InterPro Scan - TAIR

AT1G01890.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT1G01900.1

Model type
Protein coding
Short Description
subtilase family protein
Curator Summary
Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.
Computational Description
SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198; Bacteria - 3931; Metazoa - 46; Fungi - 433; Plants - 1873; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Link
InterPro Scan - TAIR