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11-2243-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22847970 [Map]; Strand: w
      • AT3G61723.1 - [+] show detail - PHD finger protein
        Distance: -1045; Region: intergenic
      • AT3G61730.1 - [+] show detail - reduced male fertility
        Distance: 457; Region: intergenic
    Flanking Genome Sequence: 11-2243-1 - 5-prime edge 
    TGGCTTGTTG AACAATTGGC TTTTCTCGTC TTTTTTGTCT TCCCATTATT 
    GAACCGGAAC ATCAAACCAG CTCATTTTTT TTTTTTTGNA AAAAANGGNA 
    AAATNNNCCC NAAAAAAAAA AANNNCNTTT TNNNNNNNCN TTTTTGNNNT 
    TTTGNAAAAA AAAAAAANNN NNNCTNNNNA AAAANNNNNN NAANNAAATT 
    GGNNNNNCNA AAACCNNNNN TTTTTTTTTN AANGNNNNNT NGGGCCCCNG 
    GGAAANCCNC CNANTTTTCC CNCCNNCCAN TNNTTNAAAA GNNNNNGGNT 
    TTTTTTTNNC NAAANAAAAA AAANNNAANT TTNTTTNAAA ANGGGGCCNC 
    CCCNAAAGGN ANNNNCCGGG GCGGGGGANC NNCCCGNCCN CCNNNGGGNG 
    GNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22847854 [Map]; Strand: w
      • AT3G61723.1 - [+] show detail - PHD finger protein
        Distance: -929; Region: promoter
    Flanking Genome Sequence: 11-2243-1 - 3-prime edge 
    ACAAGCCATG GTTGCAACCA TGGTTCAGGT TTAAAGAGAA ACTCTATTAA 
    GAATAGTCAT AATAAGAAAA CAGAACAAGG ATATCAATGA CAATGCACCG 
    GTTTTAATGG TGGTTTTTAA GCT

AT3G61723.1

Model type
Protein coding
Short Description
PHD finger protein
Computational Description
PHD finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G61740.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61730.1

Model type
Protein coding
Short Description
reduced male fertility
Curator Summary
Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain.
Computational Description
REDUCED MALE FERTILITY (RMF); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36000.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR