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11-2266-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7295538 [Map]; Strand: c
      • AT1G20930.1 - [+] show detail - cyclin-dependent kinase B2;2
        Distance: -792; Region: promoter
      • AT1G20940.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2266-1 - 5-prime edge
    CTCACAAGGC GGATCAAGAA CATATCTATC GAGGAAGAAA CGCTTGTATA 
    TTGGAACATA GCTATGTACG ATGGCAAGTC TCTTGTGGTG AGGGTGAAAA
    AGATGGGTTT AGAACCTTTG GCAAGTGTTC TTCATGTGTA CGACATGGAA
    GCTAACAGTT GGGGAGTTTT GGTGTCAACC CTTGCTTGGC CCAATTGCGT
    CCGAGATTTC TATAAATTGA CGCCCTCCTT GTTCTTTGTA GAGGAGGATG
    AGCAACAGAA GGTGCTTGTT GCTTCTAATG ACCAACGCAT CTCCTATATA
    AATTCGATTA TGGGACTCAT TGATACCACC AAGTAAACAT TTAGGGCCTA
    TAGATTATAC AAAAAATGTC CTGATTTATA AGAATGTTTG TTTCCCATTT
    GCTTTTATCA TTGCACTATT ATGGTTTATG TNTTTCAAAT CTNAAAAANA
    ANNGGGNATT NNNATTNNTT TTNGGNCAAA AAAANNTTTN NNANAANGNN
    GNNGGNNTTT TNTNNNNNNN NGGNGNNNNN TNNTNNAANA ANNNNTNAAG
    GGGNCCCNNN NNNTNNTNNA NNNNNNNNNG GNT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5984230 [Map]; Strand: w
      • AT1G17440.1 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon9 (3UTR)
      • AT1G17440.2 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 11-2266-1 - 3-prime edge
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTCT 
    ATGGAGAGTT GAAGGCACAA GTAGTGAAAC TGTGTATTAT ATATAAAATT
    CATGAGTCTT ATAGGAAATC AAATAATACA GTTAATTTTT TCATAGTTGT
    GGGACTTTCT AACTATTTCG TCTTCTTTAG TGGGTTTTTG TTTTGTCCTT
    TTGTAATTTT AGTTGTCCTC TCCATTTTAA GCT

AT1G17440.1

Model type
Protein coding
Short Description
Transcription initiation factor TFIID subunit A
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.
Computational Description
ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17440.2

Model type
Protein coding
Short Description
Transcription initiation factor TFIID subunit A
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.
Computational Description
ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20930.1

Model type
Protein coding
Short Description
cyclin-dependent kinase B2;2
Curator Summary
Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.
Computational Description
cyclin-dependent kinase B2;2 (CDKB2;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;1 (TAIR:AT1G76540.1); Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93; Bacteria - 11427; Metazoa - 41458; Fungi - 12141; Plants - 24398; Viruses - 437; Other Eukaryotes - 19080 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20940.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1); Has 79 Blast hits to 74 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR