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11-2278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3354857 [Map]; Strand: c
      • AT1G10230.1 - [+] show detail - SKP1-like 18
        Distance: -714; Region: promoter
    Flanking Genome Sequence: 11-2278-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAC GTGATCAACC AAAAGGTTTT TGACATTAGG 
    GTTTTAACAT AAATCCATAG ATTCGTTACA GAAATGAAAA AACTGGAATG 
    ACTCAACTAG AAGAAACATA TCATCAATCT CATATTTTAT TTCATTTTTA 
    TTTAGAGAAA AAGAACCCTA ACTCACTTGG GGGTTGACTC AGTCGTTGAA 
    GATGGCAGTG AAGAGAATGG CAACGGATGC AAGTCCACAG AGAACAGAGA 
    GGAAGTCGAA AACGGAAGAT GAAGGACGAT TAGCTCGAGC AAAGCCGTGT 
    GCGACCTGCA ACACAACGTA GCCCACGGAG GCGTAGGCGA AAGCATTGGA 
    AAGAGGCTTG CTTGGATCTT TCTCGAACTT AGTCATCTGG CCGTGGAGGA 
    AGAAGGAAAG CATGCCTATC ACCGCAGTCC TGAGGATTTG CTCGAAGAAT 
    CTCTTGAATG CCTCTTGGTT TCTTTTGCAT TGCTCCTCCT CTTCGCTCAT 
    GTTCATTCTC TCCATCAACT GAGGAAAACA AACAATAAGG TAATCANAAA 
    AAANGAAAAA AAAAAGGGGG NNANTNGNTT TNGGAAAAAA AAAAAAACNN 
    TTTTCCCGGG GGGNGGGNAA TNTNCCTTTN NCCNCNAAAA AAGGAAAAAC 
    CNGGNNTNTT AAAAAAANAA AAANTTGNCC CGTTTTAAAA NCCCNGGGNT 
    TTTTTTTNTT TNGGNGNCCN CNNANAAAAA NAAANNNNTT TTTTNTCCNC 
    NCCCCNCNCG GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3354855 [Map]; Strand: c
      • AT1G10220.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (3UTR)
      • AT1G10230.1 - [+] show detail - SKP1-like 18
        Distance: -716; Region: promoter
    Flanking Genome Sequence: 11-2278-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATT 
    GATCATCATC CAAGACGGCA TTTTTTTTGT GTCTTTTACT AGCGAAGCAT 
    CTTGATATTT TACTCTAGTT TTAGGTACTA GGATCGGTTT TCTACAATCG 
    GATTCCTGAT CGATTATCAA AACCAATCAA CCTAGAACTG GTTCAGCAAA 
    ATTTCAATTT TTTCTCTTCC GAATGTTCTA GAATCCCTCC ATAAACAGAA 
    ATTTGGACTT ATTCGAGTCA AATCCCTAAA GGTGTGTATG GGCTTTGTAA 
    TAGTTTGGCC CATTATTCCG AATCATTTCC TTGTTAATTG AGTGTATTAA 
    TAAATGTTTT GGACTGGTTT GTACCAAAAA ATAAAATAAT GTTAAGCT

AT1G10220.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10230.1

Model type
Protein coding
Short Description
SKP1-like 18
Computational Description
SKP1-like 18 (SK18); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1); Has 1421 Blast hits to 1417 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 174; Plants - 532; Viruses - 11; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR