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11-2295-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10142124 [Map]; Strand: w
      • AT1G29050.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
        Distance: -2916; Region: intergenic
      • AT1G29060.1 - [+] show detail - Target SNARE coiled-coil domain protein
        Distance: -5569; Region: intergenic
    Flanking Genome Sequence: 11-2295-1 - 5-prime edge 
    CTGTCAAGCA AACATAAAAA TTGTACCAAC CAATCATTCC ATTGCTAACA 
    ATCATATTAT ATATTGCCGA ATCATTTCGA CTGTCGTCCT CAAGCAATGT 
    TTTCAGCTTT GATTTCTTCG CTATAATTGT GTGACATTTT CGATAGGATT 
    TTCGCTTTTT TATTTCTTTT CATTTCCAAA CTCCGGGACT CACTTTTATA 
    TAAAAGAAAT TCATTTAAGA TTTCGACTAT ACACATATTT AAGCAACTCA 
    CAATGATAGA GCGAACATGT TAAAAAAAAA ATNGNATTCG NGTTACAANA 
    TTCNAGTTTA AATTCAANGT TTCATTAANA ANGANGATTT AAGNNCTTTA 
    TATTNGCCAC AAATAATACA AAATCTCCNG CTACAAAAAA AAAAGGNTNN 
    AANTTTNGGG ANNAAAAAAT TTTNAACNNC CGGGNCCCNN NAAAAAAANG 
    GNNNCCCCCC CCCNNAANTN GNNNNNANNN TNNTNNNAAA AAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10142008 [Map]; Strand: w
      • AT1G29050.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
        Distance: -2800; Region: intergenic
      • AT1G29060.1 - [+] show detail - Target SNARE coiled-coil domain protein
        Distance: -5685; Region: intergenic
    Flanking Genome Sequence: 11-2295-1 - 3-prime edge 
    CTTGACAGCA AAGAGATTAT TAGGTCTTCT TAATAGAAAA CAAACACATT 
    TTATATTATA AACCTAGGAA AGGAAGAATG TTTATTTTGG AACAAAATCA 
    ATCAGAATAT CATATGACTG ATTAATAATA TTTTCTGATA TCACCTCTTA 
    GATAATAGAA CCCTCCATAA TAGGTCTAGG AAAAGGTATA TATTCAGTTT 
    ACATTTCTAA TAAGTATCAT TTCTTTATGT CGACAGTAAG ATTATTTCTA 
    CATGTAATAG TACTATAGTA AAAAACGAAA TTTTAAATAG TGATATGAAA 
    TTTGTTCCCG TATATAAGGT GATCACTTTT GAGTAAATAA TATGCGAAAT 
    CTAGTGCAAT ATTCCTAAAC AACCATACCA AAAACACTAA AATAAAATAA 
    GCAGGATC

AT1G29050.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 38
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G29060.1

Model type
Protein coding
Short Description
Target SNARE coiled-coil domain protein
Computational Description
Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT4G14600.1); Has 153 Blast hits to 153 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR