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11-2312-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334049 [Map]; Strand: c
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -572; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -683; Region: promoter
    Flanking Genome Sequence: 11-2312-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC ATATGAGGAC ATATATACTG ATAACTTGAG TTTGTGAATT 
    GTTTAATGAT TGGATTATGG AACAAGTTAA AAAAAAGGTT TACTTCTTGT 
    TTTTTATTAT TGTCATAAAT GAAAACTTCT TATAATTTTA TGGATAGTTT 
    TATATATGTT TGGGTATATC TGGACAAGGT TTGGGTAAAT AATATTGAAA 
    CCCAAAATAA TTTTGGTTAT TTATTGGGTT CTTCAACCTA TACCCGANGA 
    GAACCTATAG CTTAAATAAT ACGTATAATC GAACCANTCT TAAACTTTTA 
    AACCGAACCC GNNAGANTCN TTCCAAACCC NACCCCANTA CCCNNATTNC 
    NTCNCCNNNN ACTNNNNCNA NGGNCNCCTC CNTNNNAAAA AAAAAAGAAC 
    CCCCCCCCNC CCCAAAAAAA AAAAAAAAAA AANGGNCCNN NNNCNAAAAA 
    AAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334106 [Map]; Strand: c
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -629; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -626; Region: promoter
    Flanking Genome Sequence: 11-2312-1 - 3-prime edge 
    CAAAAATGTA TATATATGTT CGGGTAATAA AAAATACTCA CGGATATCAA 
    TTTCGGTTCA TGTAATACCT GATACCTGAA ATTATTTGAG AACAGAACCC 
    GATCGGGTAT TTTACAAGAA GATATGATAA GACCTCGTTT GCAAATCTCA 
    GTCCATGAAC TCGATTTCTT TTTTTCTTAA GGAACAAGTT TAACTATCCA 
    ATACTGAATA TACATCCATT CGGTACTAAA TGTATAGTAG ATACGAATTT 
    CCTCCGGAAT GACTCAGAGA ACAGTGAGAG ATTAGTAGAT AAGATACTTA 
    ACTTTTGGGG AGAGACCTCA GGACCCATAT GACTTGAAGA CTCACACCAG 
    CTCTGAAGTT AGACGGGTTT TGGGTCTCCG GGTCAAGTTT AAAGAAAAAA 
    TGTTAAAGTA GATTTCCCTT TCTACTTTGG TTTGAGATGA GTTTAGAATT 
    TAGTTCGATG TTACGAACGT GAATATATAC CCAAAACTNG NGANGNNTNT 
    AAATGCTTAT NANTNTNNAA TNTNTNTGNN CTGNNNNGNG NNNNNCCNNN 
    NNANNNNNNN G

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR