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11-2319-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1874407 [Map]; Strand: c
      • AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -689; Region: promoter
      • AT1G06149.1 - [+] show detail - conserved peptide upstream open reading frame 8
        Distance: -689; Region: promoter
      • AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -689; Region: promoter
    Flanking Genome Sequence: 11-2319-1 - 5-prime edge 
    TCTTCCCAAA CAAAGCCTTC TTTCACCTAC TTCTCTCTTT TTGTTTCTAA 
    CAAATATTGA TTTTTTTTTC TNGTAACAAA TACTTATGAA CTTGAAGAAA 
    AAAGATCTAC CTTATTTTAG GGTTATATTT TCAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1874479 [Map]; Strand: c
      • AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -761; Region: promoter
      • AT1G06149.1 - [+] show detail - conserved peptide upstream open reading frame 8
        Distance: -761; Region: promoter
      • AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -761; Region: promoter
    Flanking Genome Sequence: 11-2319-1 - 3-prime edge 
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCCCGGAA 
    GAGGGAGGTG TGATTGTGAT AAGGGGCGAA TGATGAACAT TGGCCAAACA 
    AACAAAACAA GTGTATCAAG AAAGAAGCCT CACCTTTCGC TTTCAATTTC 
    ACACTTCTTT GTTTGACCTT TGGGACTTGA GCACATTCCA TTTTCCTTTT 
    CGTTCTTTCT TTTGTTCTTT CTATATGTAT AATAACACAC AATTTTTTGC 
    GTAGATTTAC TGTCAAGAGG ATAAGAGGGA AGGAGAAAAA GGAAACCGAA 
    AGTTGTATGA CTTTTACTAT TCAACAATAT CATTTCTCTT TTGGCATGTT 
    TTTGTGGACG AAGCCCAAGT TCAAGAATAC ATTTAACGGT CTCCCTGTAG 
    GAAAGAAGAA AAATAGATCA TAACAACTTC TTTTGGTCAA CAATATTATC 
    TCATAATTGA AGTGAGAATA AAACAAGAAA AACTTTGAAG AGTGAATATT 
    TATCGTCGTT TGTTAAATGG ATATGTGCAT TCANAGTTTG AAGAAAAACA 
    TGAAAAAGTT TAAAGAGTGA ACACCNCNNA CNCNNCNNCC

AT1G06149.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 8
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF8 represents a conserved upstream opening reading frame relative to major ORF AT1G06150.1
Computational Description
conserved peptide upstream open reading frame 8 (CPuORF8); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06150.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06150.2

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1).
Link
InterPro Scan - TAIR