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11-2389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • albino value (PATO:0000968)
    (Seedling::albino)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19680171 [Map]; Strand: w
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: intron2 (CDS)
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-2389-1 - 5-prime edge 
    ANAAGGANTG CCACCGGAGT ATTNCGATGA TGTTCGTCTC CTCATCCTTT 
    NTTTGTCTCT CAGTCTGNTT TTTTCTAAGT NGGTGGGTTT TTTGATNCCN 
    NGAATGGCAA GCTCGACANA GAGAGAAGAC CAAAGAACTG CGGCGGATGC 
    AGCGGGAGGA AGAAGAAGAA GAGGAGAGAA AGATTGAAGA ATACCGTGAA 
    ATTGGCACTG AGGTTGAAGG AATTTCCCGA GCANGACTTA AGGAAAGCCA 
    GAAAGCTCGT CTCCAGCTTC ATCAGAGCTG CCGAGGAAGT CGAAGAGGTA 
    AAAATCAAAG TCCCCTTCCT TCCTTATACA AGCAGGCAAT TATTATTATT 
    ATTATGTATA AGACAATTTC TGTAGAGAAT TGAAGAAGCA GCCGAGAAAG 
    GAGAACTTGA CGAGCTTGTC CTCATGATCA TATGGAACCG GCTTGACCTT 
    GCTAGGCGCN ATGTAACATT TNTNTNNCTT GNGAGTNATG CGTTNTCATG 
    ATGAAATGNA CCCTTANATC CTGTGTTGCT TTACTTTCTG GATGANAAGG 
    ACGCCATCAN AAGTNTNGNT CNTTTTGTAT ACAANGAGTC NANGNNATTT 
    GTNCNNCTTN GNNCTTTNCN ATGCTATAAN ANNTNTGNCC CGNTGGGCCT 
    TTATATCNAC AANCTNTCAA ACTCACNCNN TCGNNCNNGG NAGAATTATN 
    ACCNCTTTTA NNTTNCTTNT ANNGGGAANN TGNANCCTTN NTNCGGGNGC 
    NNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19680055 [Map]; Strand: w
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon2 (CDS)
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-2389-1 - 3-prime edge 
    TTCCTTCTAG AAGCACTTCA TCATTGTTTC CCGAGCATCT TCTTCGGAAT 
    TTAGCTGAGA CATCGGCAGA GGATCATTTT AGATGAAACA AACTAATTTT 
    GGATTTCACA AATTAAACCC CGCGAAACTG ACCTGTAGAA ATCGACAACT 
    CTGTAGTCAG CTTCTTCGTA GCAGAAATAA CCCGAGGGCN TGCTGAATAG 
    AGGGGATGCG CACGTCAGAA CCAGCGACGT CGCCGCCATA GTCGAGCT

AT2G48120.1

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 504 Blast hits to 478 proteins in 108 species: Archae - 0; Bacteria - 11; Metazoa - 283; Fungi - 39; Plants - 50; Viruses - 8; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48120.2

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 299 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 13; Metazoa - 176; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR