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11-2403-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93378 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: -231; Region: promoter
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -545; Region: promoter
    Flanking Genome Sequence: 11-2403-1 - 3-prime edge 
    CTTGAAAACG GNAGAGGTAT TTTACNGACC GTTACCGACC GTTTTCATCC 
    CTGGCTTAGC TCAACCCTTT ATTCATTCAC TTAGTANTCA AAAAATGACA 
    TTTNCTGATC AAACAATCTG TCAATGNAGN ATTAAAAAAC TCTTCAAAAT 
    TGATAACCTC ACATGATCTG CACATGTGTC ATATCTATTA ATTANAGATT 
    TTTTCATGTG TAAAATCATT ATAAAAAATT ATATAATATN AATTAGAAAT 
    GTTGCTNATG TTTTGCATCT TGCNTATTTT TACTTGATTT TNTGTCAATA 
    CATTTATATA AAAAAATTAT ATATGTNTNT NATTAATACC TCTAAAGTTA 
    TGAATATAAA AATGGCTTAT TGCTTNTATA GCCATAGGGC TAAACTTCAT 
    TTCGGCAATT CAAGAAACGC TCTGATTACA CCGTACCTTC AATTACTCCA 
    AATATCTTAC AAGCATGCTT TGACTTTGTG AGCCTCGATT GGAACTGATT 
    GTTCAACCAA TAGTCGTGTT TTACAGTGTC TCATCAAGGT TTGGTTTACG 
    TNGACCCTTT CATAGCCGCT GGCACTATCC TCCTCTCACC ATTGTGGTAC 
    CTACTTATCG GCNATGCAAT CGACGTTGGG GGATNNGATT GGNGAGNTNT 
    NGTCCAATCC ATATTGNATT TCACTCANNG GNNNNATGGA GCTTANGNCT 
    TAAGACATCC CTAAGATCAT GTNCAAAGGC CCGTGTAGGG CCCTTNCAAA 
    TGANGTAAAG GCGGGNAAAN GCNANNAGAA CACCAGTTGA NANCNANNTT 
    TNNTTAANAN TGNNAAANTA AAGN

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR