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Mutant Lines
11-2411-1

11-2411-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 310740 [Map]; Strand: w
- AT1G01900.1 - [+] show detail - subtilase family protein
  Distance: 0; Region: exon1 (CDS)

GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT TTGGAACGAG ACGAGCCTAT CTTCGGACGT 
CATCATCGGC CTTGTGGACA CTGGGATCTC CCCGGAGCAC GTGAGCTTCC 
GAGACACGCA CATGACTCCT GTACCGTCTA GATGGAGAGG TTCGTGCGAT 
GAAGGCACAA ACTTCTCATC TTCGGAGTGT AACAAGAAGA TCATTGGAGC 
TAGCGCATTT TACAAAGGCT ACGAATCAAT CGTTGGAAAA ATCAATGAAA 
CCACTGATTT CAGGTTAGAC GGTTGAAATA TAAATGAGCC CTCTGTTTTT 
TAACTTCTTT TGATCTCACA TTGTTTAGTC TCCAAATGTT AATGGGAATA 
ACGTGAAGAA TAACTTCCAA CTTTTACCAA AAAAAAACTT CTACCATATA 
TATTATGCAA ATATAACTCG TATAAACACA TAAGATATAA TTAAAAACGT 
TGGGTAGCTC CATAACGTTG ATCCGAACAT CAAATTACCT TCCTCAAAAA 
TAATTGATCA AAATGAAAAT GCTTTTGATG ACTTTTAACT AAATATTTTG 
TTTGTTAATT TAAGANGTTC TCATTAAAAG TTATTACTAA TGGANAGCCC 
TTACTAATGG TTCCNTAGGT NGNCTCNNNA CNCCCAAGGA CNTGGGNNGC 
NTNCNGNCNN NANTGNTGNN GGNNANNTTG NCCCNNNNNN AATTTTTTNN 
GNCANCNNAA GGNNNNNNTN NNGGNNNAGG GNNNNTTNNN GANNNNNNNT 
NNNANNNNNN NCC

3 prime edge [+] show sequence

Chromosome: 1; Position: 46776 [Map]; Strand: c
- AT1G01080.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)
- AT1G01080.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)

TTTAAAACGG NAGAGGTATT TTACTNGACC GTTACCGACC GTTTTCATCC 
CNCAGGAGGC CGCCATTATC GAAGGACCAG AAAGTAAATT ATTTGAGAAG 
AATGATTAAA AAAAAAANAA ATGAAATAGA AATTAATANA ACAAATCGGG 
TCGGGTCATT TAACCCGTTA CAATCCTGCT CGGTATTCGC TACGTCANAT 
NAAACACTCT NTTTCGCGTA NCAGGTTTTG TTTTTCATGA AATAAACAAA 
AGGCCCAAAG TTNTAAATCA AAAAATAAAA AATTATTCAA ACNTTTTCAT 
TTNTTCAAGT CTCTTATTCC CTTTACCAAA CNCTTTAATT ACAAANAAAG 
TAGGANCCAT GAAATTANAA CCAGNGCAAT CTTGTCTAAT GGCCCATTCA 
TCCTCAATCT TNNTTNTGAC CACTACATNT ACAACTCCTT GGCTNTGAGG 
GAAGGNGGTA GTGATANAAT CTGCTNTGTT NGAACTCCCT CANAGGTTTG 
AAGCTATNTT TTGACCCAAA TGATCGTTAT GCAAACCACA ACACTGNCTT 
NTTTGATCTT ACTATGAANA AGTNTGCAAA TNTTGAGGTT NAAAGCTNTA 
TTATAAGCAN GCTNTGCCNN AGATGAANCA ATGAGGAAAA GANTTTTCTG 
TGCTNNGGGA AGCTGATTGG CATGNNTTGT NNTTATACAA AATTGGGTGN 
AATTNGGGGG NCTGGCTCCT GTNGNAAANC CNTTTTGTTA AAANTNAATC 
NCCCCNGNNN GNAAAAAATN TNTTTAAAAA AAAAATNNAT TTTCGGGGNG 
G

AT1G01080.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01080.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01900.1

Model type: Protein coding
Short Description: subtilase family protein
Curator Summary: Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.
Computational Description: SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198; Bacteria - 3931; Metazoa - 46; Fungi - 433; Plants - 1873; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Link: InterPro Scan - TAIR