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11-2417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2141459 [Map]; Strand: c
      • AT2G05710.1 - [+] show detail - aconitase 3
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-2417-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    TTCAATCATT CATCACTCCG ACGTCAGATT CAAAATCCTC CATGATCGAT
    CCCAATTGAT CAATCAATAA CCTTATCTTC TTCATCTTCT CTGTCAGTAT
    CTGAATCTGC ATCTGGAAGC GTGATTTCAT CATCATGTAT TTAACCGCTT
    CATCTTCCGC TTCTTCCTCC ATCATCCGAG CTGCTTCTTC TCGCTCTTCT
    TCTCTTTTCT CTTTCCGATC GGTTTTATCT CCCTCCGTTT CATCTACTTC
    TCCGTCGTCT CTTCTCGCTC GTAGATCTTT TGGTACCATT TCCCCTGCTT
    TCCGTCGCTG GAGCCATTCC TTTCACTCGA AACCATCTCC GTTTCGCTTC
    ACCTCTCAGA TCAGAGCTGT TTCTCCAGTC TTAGATCGTC TCCAGAGAAC
    CTTCTCTTCC ATGGGTAAAA TATCTCGATC TGATTGATCT AGCTTGAGTT
    TTTTATTCCG ATCTCTGTTG ATTAGTAGTA ACTGTTTTGT GATTATGATT
    GTTTCAGCGT CAGAGCATCC GTTTAAAGGG ATCTTCACTA CACTTCCTAA
    GCCTGGTGGT GGTGAATT

AT2G05710.1

Model type
Protein coding
Short Description
aconitase 3
Curator Summary
Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro. ACO3 is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational Description
aconitase 3 (ACO3); FUNCTIONS IN: aconitate hydratase activity, copper ion binding, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 1 (TAIR:AT4G35830.1); Has 20552 Blast hits to 20369 proteins in 2575 species: Archae - 558; Bacteria - 10777; Metazoa - 503; Fungi - 660; Plants - 232; Viruses - 0; Other Eukaryotes - 7822 (source: NCBI BLink).
Link
InterPro Scan - TAIR