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11-2425-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26508490 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -1921; Region: intergenic
      • AT5G66360.1 - [+] show detail - Ribosomal RNA adenine dimethylase family protein
        Distance: -1739; Region: intergenic
    Flanking Genome Sequence: 11-2425-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTNCATCTA 
    ATAATATATA TTTTTCTTAC ATAGGCAGAA AGAGAAGAGT GTTTACTACA 
    AAAGAAGCAC GCACTGATTT GGTTTTTTCA CTTTCACCCA TTCATTGCTC 
    TTCTACACTC TTTTAAATCT CTCCTTTTCT CTTCAACNTT TGAAACTTGA 
    AAAAGGACAT AAAAGATTTG GTGGGTTATG TTTCTTTTCT TTGGAGCCAA 
    TAACGGAGCT TAGAGATTCT TGCAACTTTT TTCCCCCTTG CATCCTCCTT 
    TACTCAATAG TAATTTATGT GTATTCTGTA TCTCTTCACA AAATAATAAA 
    CAAAGACTGT CTTTCACCAC AAAATCTCTT GAGAAGCTGC AAAGTTGGGT 
    AAAACTTAAA TGAAATGTAC ACTTTTTTAT ATATTACATA TCCGTTTTCA 
    NAAATAGATT TCATAAACTA TGTGTTCCAT ATGGATC

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66360.1

Model type
Protein coding
Short Description
Ribosomal RNA adenine dimethylase family protein
Computational Description
Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity; INVOLVED IN: rRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 10133 Blast hits to 10130 proteins in 3048 species: Archae - 291; Bacteria - 6778; Metazoa - 278; Fungi - 201; Plants - 119; Viruses - 0; Other Eukaryotes - 2466 (source: NCBI BLink).
Link
InterPro Scan - TAIR