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11-2448-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28468397 [Map]; Strand: c
      • AT1G75820.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -1426; Region: intergenic
      • AT1G75830.1 - [+] show detail - low-molecular-weight cysteine-rich 67
        Distance: -3960; Region: intergenic
    Flanking Genome Sequence: 11-2448-1 - 5-prime edge 
    AAAGCACCTG ATATTTTTTT CTATCAAACT AAAAAAATTG TTAGCGGGAT 
    GAAGATATAT TCGCCAAGAA CCATAGTGCT TGTATAACGG CAGACCATTA 
    ATTCACAACT ATTATTATTT TATTGTTAGA TTGTTGATAG AATCGATTTT 
    GATTGTGGCA GAATCGATCT TGTAAAAACT GCTTTAAGGT GCTTACTTAT 
    AATTAAGAAA GATTCACTTA TGTAAGTTAA GCATTCGGCC TAATTCATTA 
    GGAATATTTT GCTATTCGTT TTGCCATCAT TAACAACAAA ATCGACACGT 
    TTTCAGCCAA AAGTATTAAC AACTAAACCT AAAACTTCAA ACATTAAATA 
    GTTTTTAGTA TCTTTAGTTT CAAACTAGTG ATTTGTCCTA ATATCAACAC 
    TACGAACGAA TTTATATACA TTGAACTTTT TTTCTGAATC ACCGATTACA 
    AAACGAATAT AATTTGGTAT CGGCAGTTGC TATTAATTTG ATCGGTTTGG 
    ACTTTGGACT AATCACGATC AAAATCTTAA ATGGACCGAA GTGAATAAAT 
    CCCTAATGTT TTCAAGAGAG TCACACGAAC GAAACAAAGG TAAATTATGA 
    ACATAGAGCG TGGGGACCTT GAAGCAAAAG GTCTGTATGG TGACAGACCG 
    GTGAGTGGAG TGTNTGAATG AACGAGAAGT GAGAAGACNA ATTCCANGAA 
    AGAGCGTGAC TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13701302 [Map]; Strand: w
      • AT1G36380.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant stru...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-2448-1 - 3-prime edge 
    TGCCCGNACC GNCCNTATTA TCCNTACATN AGACCAANTA AATAANATGA 
    ATATGGCTCA ATTGGGGAAC ATGATTCAAA GAGTAATTAC CATTGGGGAA 
    CAGGATTCTG AGAACTGATA CTTTTGTAGA ATTTGGCGAT TCGACCACGA 
    GATTCAGGTT TTGGTATAAA GGTTTTCTTC CTCAAGCCAA AGATCACCAG 
    CCCGGNCCCG TCNACCACNC ATGNCCCNAN NNGGANGTTN GNTTNNTACT 
    NGTNAGTNNN TNNTNATCTG CCCTNAATAN GANNNGTNCC CCTCTCTTCN 
    NNCGNCNNNT NGANNCCNNA CAANANANAN NTTNNTNNGN NCCATNCTGT 
    ATGANNANNT CNGTGTNTCG CNCNAGNNTN TNTAGCNNNC NCNNNGNANN 
    NNNTNNCNNN NGNNNCCCTN TGTNCCGNGN TAACNANGAN CACAGCAGAG 
    NTNNNGGNNN NACACNCCNN GNNNNANGNT TNNTTTNNCA NCGTCTTCCC 
    CCNNCCTGCG CCTNATTACG TTGNNCNCCA NNTNNNCTGT NCNNNNGNTN 
    NTANNTNTAN CNNNGGNNNN NANNCNNTNC NNGNTNTNGT NAGNNNCNNC 
    NNNCNTCNNG NATTANNNCN TACCNCTANC ANANGCCNNC NACTTTNNCT 
    NCNNTNCNTT CGCCCCCCCN TCCCNCAACN CATCNGNNNN CNNCNNACNA 
    NTGTNNNNCN CCCNNCTTNN CATNCNGNTA NNCGCNCNCN GCNNCNNNNN 
    CGCNNNANTC GCCANNNCNA TCCCTATTNG NTNTTCCGGC CCNCANTNT

AT1G36380.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75820.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain.
Computational Description
CLAVATA 1 (CLV1); CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 209359 Blast hits to 134993 proteins in 4611 species: Archae - 138; Bacteria - 19949; Metazoa - 62202; Fungi - 10385; Plants - 91018; Viruses - 406; Other Eukaryotes - 25261 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75830.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 67
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 67 (LCR67); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 172 Blast hits to 172 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR