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11-2507-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 666417 [Map]; Strand: c
      • AT4G01530.1 - [+] show detail - transposable element gene
        Distance: 1315; Region: intergenic
      • AT4G01533.1 - [+] show detail - other RNA
        Distance: 731; Region: intergenic
    Flanking Genome Sequence: 11-2507-1 - 5-prime edge 
    GTCCAGAGTA AATGATGGGA GCTTAATATA AAGCAATTTG GTTAAACATT 
    TCGATATGTA GAGAATTGGT TTTAAAGTAG TTTTTAACTC TGCTTTTTCC 
    TCTGTTTTTC AAATAATTTT AACATTTCTC TAAATGTCAA ATCGGTTTCT 
    GTCGACGTCT TAATGTTGAC AGGAAGCCAC AACTTGAGTA ATAAGTTTCC 
    CAATAACTTT TATGAACTTG CCACCTATCC AATTAGGAAC AAAAAGAGAT 
    CGAAAAAGTT ATGTAATTAT TACTTTCTTT ATACTAATTA ATTAACCTTT 
    TGATTATTGG ATAATTATTA CTTATTCGTG TGGAGTTGAG TTATCTCTAT 
    GATTCTAAAA AGTTAAAAGT TTAACATTAT AAAAGTTCGA AAACGATCTC 
    TAGATAAAAA TATTAGAACA TATGCTGTTT AAAGAAGTTT TTAATTATCA 
    AAAACACAGA AGTGATAATA TTGTCAGCCA TTTTACAAAT TTCAGCTTTA 
    GTTTAATTTT GGTATATGAT TAACCCATTT ATACATGTTA AACTTCCTAA 
    TCTCCAATAT TAACATTNAT CTTTTATAAN AANATCTTCT TGCCATATCT 
    CCNTCTTTTT ATTTNNACCG GCGATCTCCG ATTNTNCTAT NCCNANNGAT 
    NAANAATAAN ANNNNGGGCN GNGACCNNGG GGGNNNNANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 670257 [Map]; Strand: c
      • AT4G01535.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 427; Region: intergenic
      • AT4G01540.1 - [+] show detail - NAC with transmembrane motif1
        Distance: 226; Region: intergenic
    Flanking Genome Sequence: 11-2507-1 - 3-prime edge 
    CTCTGGACCA ACATAAATTA AGCTATATAC CCTATGTTCC ACAAAGATAA 
    ATGTAGCATC TTGAGACACT CTTGCTGAAT CTTGGTTGAT TCATAAGCTC 
    TATCACACCA ATGAGATTAC AAAACCCTAA AGTATATTTT GACTTTACGC 
    ACAGGAAAGA CCTGTAAGCT ATATAGGTTG AGATCAACCT ATTATTCAAA 
    CACTCAGAAG AAAGCAGAAA TAGAGAAAGC CAAATAAAAA ACGAGTGCTT 
    TGATCGATCT GCTTTGCCTC TCTCGCGATC ATAACTTCTT CAGCGGGATC 
    AATCTTTTGA CGGGTAGTAA AACCGATATG ATGTTGCCAA TGATCATCTT 
    CATGAGATAG ATAAATCGTG GTTTCTTGCG GTTTCTCTCC ATTGCGTCCT 
    CTACAATAAA CAAGCCCTTC TTCTCTGTCT TCACCAAAGA TGACTCATTG 
    TTCATGGATG CATCAACAGC TCTTGGGATT TCTTGTTTCA CCTGAAAAAG 
    GAAAATCACA TAATCATCAT CTTTAAAGTC CAACATATGT TTTAGATTAT 
    AAGATACAAA CAAGTAGCAA CAAAATGAAC ATAAGAGCAA CTCAAGACCT 
    CTTGTTTTAA TTCCCGGATC TCTCTACTGA TTATTGAANG ATCTGCACAA 
    GTTTGNAGAT CTTTGCAAGA GTCTGTGCTT GAGCAACTTG ACAAGGGTCT 
    ACTTGAACTA CCAACACTAA TATTTGGACT TGANGGTCCC TG

AT4G01530.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26860.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Link
InterPro Scan - TAIR

AT4G01533.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT4G01535.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01540.1

Model type
Protein coding
Short Description
NAC with transmembrane motif1
Curator Summary
Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1). NTM1 regulates cell division in Arabidopsis.
Computational Description
NAC with transmembrane motif1 (NTM1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 67 (TAIR:AT4G01520.1); Has 2751 Blast hits to 2734 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2749; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR