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11-2511-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • abnormal (PATO:0000460)
    (Seed yield::seed shape)
vascular leaf (PO:0009025)
  • dark green (PATO:0001249)
    (Leaves::dark green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 227639 [Map]; Strand: c
      • AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -243; Region: promoter
      • AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -444; Region: promoter
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: -55; Region: promoter
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: -55; Region: promoter
    Flanking Genome Sequence: 11-2511-1 - 5-prime edge 
    GTCGAAACGT TGGCCGGCAA ATTCAATCAT TCAACTAAAA ATCTGCTGAC 
    CAAACAAATA AAAAATGCAA CGAGGTAATT ATCCAGTACC CTTGGGTATA 
    CGATAGAGTC TGTGGACACC GCTCAGATGC AGTGCTGACA AATTTAATGG 
    GCCTATAGCT AAAAGCCCAA ATTTGTTGGT CCTAAATCCT AATACGCTGT 
    CCTATAGAAA ACAAAAGTTT CTTCTACACT CAGCACAGAT CCGACCCGAC 
    CCGACCCGAC CCGACAGCTT CCGAAGACGA AATTTCTACA TTGCACGTCT 
    TTCTCCGCTA GTCTCGAGGA TGCTAATGGA ATCTTTCGAG CATCTATGGT 
    GACTGGTGAG TAGATTCTTC TTGCCCACAA GTTTCTTTCA TTGTTTCGTC 
    TTTACGAACT ATGGTTGACT TGAACATTTC GTAGATAACA AATTCAACTT 
    GTCTTCTCTC TCTGTAATTC GTGTCTTCTT CAGCGCCAAA AGAAATCACT 
    TGATTGTTAA AAATTCTTCT TTTTTTATTT TAAAGTAGTT GGTGGNGGTT 
    TCGGACACAA ATCTTGGAAC ACAAGCT

AT4G00500.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00500.2

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.2

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.3

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR