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11-2516-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Flowering & Growth::late flowering)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1186861 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon4 (CDS)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-2516-1 - 5-prime edge
    CGTCAGACAC GTTTTCCAGT GTGCCCGGAT GAAACAAATT ATATGGGCAA 
    GAGATAAGAA CAGTGAAGGA GAAGAAAGTG CAGATCTTTT TCTTAGGGGA
    ATCGGTTTAA GAGAGTATTC TCGGTATATA TGTTTCAACT TCCCGTTTAC
    TCACGAGCAA TCGTTGTTGA GTCATCTTCG GTTTTTCCCT TGGGATGCTG
    ATGTTGATAA GTTCAAGGCC TGGAGACAAG GCAGGACCGG TTATCCGTTG
    GTGGATGCCG GAATGAGAGA GCTTTGGGCT ACCGGATGGA TGCATAACAG
    AATAAGAGTG ATTGTTTCAA GCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1186977 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon4 (CDS)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-2516-1 - 3-prime edge
    GTCTGACGCT TATTTCCCCG AAATGGAGAT ACAGGAGAAA GTAGTGAAGT 
    AGAATT

AT1G04400.1

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04400.2

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR