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11-2554-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1237326 [Map]; Strand: w
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2554-1 - 5-prime edge 
    ANGTCANATG ATGNNCCCAT CGTTTCANNT GCCTAGAACT TACCATAATA 
    TCATGCTCAG GACTTGGCTC CCGTCGCACG CAAGACAAAG ACTTATGCGG 
    TTGCTTGGGT TCATTCCGAA CGTAAACTTA CCACCCGTGT CGACTACAAT 
    GGCGGAACAA ACCCAACTTG GAACGACAAA TTCGTATTCA GAGTCAACGA 
    AGAATTTCTC TACGCTGATA CTTCAGCAGT GGTTATCGAA ATATACGCCT 
    TGCATTGGTT CAGAGATGTT CATGTAGGAA CAGTTCGTGT CCTCATTAGC 
    AACCTCATTC CTCCTAATCG CCGTCCAGGA TACAGAACCA GCAACAATGA 
    ATATCGTCGT ACCCCACCTC CAGGAATGAG ATTTGTTGCG CTTCAAGTTC 
    GTCGTACTTC AGGTCGACCT CAGGGGATTT TGAACATTGG TGTTGGATTA 
    ATTGATGGTT CTATGCGGAG TATGCCGCTT TATACGCATA TGGATTCATC 
    TGCTGTGGGA TATAGAGATN TGCTCGGAGA ANAAGANCAT CAATGTACAA 
    CATNTGCNTT TNAATANNAC NAAGGGAGCT CAANAAAATC NACAATNTNN 
    NTNTTTTTNN ACAGTACAAA TCCGTAATCC TNAAGGNCTT ANGNTTCGTC 
    ACACAAAAAG CGAAANAAGG TACTANGGGT TNGTTCNNGA ATTATTATTA 
    AAANNGGCTT GNACGGGAGT CCNTTNGANT TGANANNAAN

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR