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11-2589-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6453201 [Map]; Strand: w
      • AT1G18710.1 - [+] show detail - myb domain protein 47
        Distance: 87; Region: intergenic
      • AT1G18720.1 - [+] show detail - Protein of unknown function (DUF962)
        Distance: 4620; Region: intergenic
    Flanking Genome Sequence: 11-2589-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGAGC AAGTCATATA GCATATTTTT TTCAAAGGAA 
    AAATTAAAAA GAGAGAGAGT CGTTTAACAT GTGGGGTTCA GTTAGGACAT 
    ACAATTGTAA TAAGAATTNC CAATNNGGTA CCTGGGAANT NTNTTGNTTT 
    TTATTAAATA TATTGGCNGT AAAAATAAGT CTATTAATTT TTAATGCAAG 
    ATCACGATTA TAGAAGATAG ATAAACATTT AAAATGCTTA TGGAATATTT 
    AAATATGTAT ATGATCTATT GAAAAGAAAA TGTTTGTTTA ATAAGTGGCA 
    TATAAAATAT ATATTTTGCT GTTAAGTAAA AGATTTGTGC TTGCTTAAAA 
    GAGATAGGAG TAAAAAAAAA GAAAAATAAA TAAAAGAAGA CTTAAGCTAA 
    ACAAAACAAA AAAATCTGTT CCTTGTAATT TCTTAAGTAA AGGGTTAAGN 
    GTTAACATTT NTTTGGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6453112 [Map]; Strand: w
      • AT1G18710.1 - [+] show detail - myb domain protein 47
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 11-2589-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    AGGGAAGCAT TTTCTCTTTG TCAAAATGGT CCACGTTAAT ATTCATTGTT 
    GCAACTTGCA ACTTTAAAAC ATATCTTAGC ATATGCTAAC AACATGCATG 
    CACTCACACA GTCACACTAT ATTAAGTCAA AAGAGATGAT CAAGTATGTG 
    ACTACTCTCG TACATGACAG CGTCGTACGA AGTCATCTCG TACATATCCA 
    TTGCATCAAT CTCCATTAAA CGCCTAACTT CCTCCTCGCC CCAAATCTGA 
    ATATCTTCTC CTTCACTACC GTCAATCTTC TGACCCATCA TTGAATCTCT 
    TTCTTCTTCT TCTTCCTCTT TTGCTTGATC ACTGCTTTCG ATTATTGAAT 
    T

AT1G18710.1

Model type
Protein coding
Short Description
myb domain protein 47
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 47 (MYB47); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 95 (TAIR:AT1G74430.1); Has 8675 Blast hits to 7987 proteins in 483 species: Archae - 0; Bacteria - 0; Metazoa - 776; Fungi - 509; Plants - 5635; Viruses - 3; Other Eukaryotes - 1752 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18720.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF962)
Computational Description
Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR