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11-2610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1184716 [Map]; Strand: w
      • AT1G04390.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: -1012; Region: intergenic
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 834; Region: intergenic
    Flanking Genome Sequence: 11-2610-1 - 5-prime edge
    CCTATATAGC AATCATCTCT TTCTTTTCAT CGTCTCTTCA TTTTTCTCCT 
    CGTAGACGGA GACATCACCG ATGTGACTCG AGGGGTTGAT GATTAAAAAT
    AATGGTTACG AACCAAAACT GATAGTAAAG AAGACGTTAT CCGAATCGGA
    TCTTGCTTCT ACTCTCTTTT CCACGACAAT TCCGATTACG TCGACCCTCA
    TCCAGGCCCC ATCGACTCCT CTCTGGACGA AACCGATGCC ATTGTCAAAC
    ATTTCGACGC CTGATGATTC CTGACATTGA AGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1184600 [Map]; Strand: w
      • AT1G04390.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: -896; Region: promoter
    Flanking Genome Sequence: 11-2610-1 - 3-prime edge
    TATATAGGGG GTTCAAATGA TAATTATATA CGATAATTAG TTTTCTTCTC 
    GAGAAAAGAA AAGGAAATGA TAATTAACGA ATT

AT1G04390.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 143 Blast hits to 130 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04400.1

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR