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11-2620-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3124337 [Map]; Strand: w
      • AT3G10114.1 - [+] show detail
        Distance: 4312; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -1686; Region: intergenic
    Flanking Genome Sequence: 11-2620-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAT AGATAAGAAC GACTCTTCAT AGACGAACAA 
    TGCAACTCTA CCTTTGGAAC AGCAATTCTG AGCTCAGCCT CTCGCCATTT 
    CTTCTCCCAT CAAGATAAGT ATTCGTGCTT TACATTTTTT GATTGTTGAA 
    GTCAAGCTCT AAATTGAGTC CCGACTCAAA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 51049 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -2699; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 7656; Region: intergenic
    2. Chromosome: 2; Position: 54030 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -5680; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 4675; Region: intergenic
    Flanking Genome Sequence: 11-2620-1 - 3-prime edge 
    AAATGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATA 
    TCAAATAGTG ATTACCTTGC AGCAGAGACA GAAATACTGT GATAACTCTT 
    TGTCGAATT

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR