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11-2675-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2561428 [Map]; Strand: c
      • AT1G08160.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: -1025; Region: intergenic
      • AT1G08165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 199; Region: intergenic
    Flanking Genome Sequence: 11-2675-1 - 5-prime edge 
    ATGAACACAA NTGAGAANAG AAAGAGAAAG ANNCTNCCAC TTTGCTCTGT 
    TCTGCTTTCT CCGCTTNTCA ACGGCTCTGT TAAGTGTTAA CAGAAACAGA 
    TATAAAAGTG GGCCTGGGCC CAAATATATT AAGTCACTCT TTCGGTCTTA 
    AACTGGGTCT GGGCCCAACT GTTAACAGAA GTGAACTGGT TTTGATACGC 
    TGTCCTTTCC GACTGTTCTA AAACCGAAAA CAGAGTTAAT AAGTCATAAT 
    TTTCCTTCTT CTTTTTTTGA TACGGATGTG AATTTATTTC TGCTGAAGAA 
    AGTTGTAACT TACAAAATTG TCTTTGATTG GCCAAAAAAA TAGAGCAGAG 
    GAAAATATTT CTGCAGAAAA AATGTTATTT GTTTTTTTCC TTAAGTTCAC 
    AACATTTTTT CTGACTATCT TTTTTTCCTT TGCACATTTT GGGAAAGGAA 
    TAAAGGCTTC CGACAAAGCA AAGAAGCATA ATTAAATAAC TAATCATAAC 
    AATGTTAGTT AAAGACTCAA AAGTAAAATG GAAATGGAAA TTTATCTCTA 
    TATTCAAGAA AAACTTTTAG GCTTTTANCT GAATGTACTG ATGAGNGACN 
    CCTACAATCT CACACAATNC TTTGGNCCTT CATCTATAAT GAAACTGNNG 
    TNCCTTCTTG TGAATTAAAA GGNGNTTTTG NTNTNACTAA NTGNAACCNT 
    NCTTCCCCCC CCNANTNNNA NCCCGGCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2561544 [Map]; Strand: c
      • AT1G08160.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: -1141; Region: intergenic
      • AT1G08165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 83; Region: intergenic
    Flanking Genome Sequence: 11-2675-1 - 3-prime edge 
    GTGTTCATGT AACAAGAAAC GTGATCAAGC AGATAAAATT ATAGATTGGG 
    TGTTTAGAAA AAAGAACTTT GGTGTTCTTC TGTGCTGTGT TTTCACCTTC 
    CGTCAAGAGT GCGTTTGATC GACTTTAAAG CT

AT1G08160.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G22870.1); Has 611 Blast hits to 611 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR