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11-2700-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17884592 [Map]; Strand: c
      • AT4G38090.4 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G38090.1 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G38090.2 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G38090.3 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G38092.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -748; Region: promoter
    Flanking Genome Sequence: 11-2700-1 - 5-prime edge 
    GTCGGCGGCC GCAGAATACC GGTGTTAGTG GCTGCATCAG GCAAGAGGTC 
    GATGGCTTCG AATT

AT4G38090.1

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38090.2

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 3816 Blast hits to 3816 proteins in 1926 species: Archae - 79; Bacteria - 3485; Metazoa - 43; Fungi - 32; Plants - 52; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38090.3

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38090.4

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568).
Link
InterPro Scan - TAIR

AT4G38092.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR