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11-2705-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5649331 [Map]; Strand: c
      • AT5G17170.1 - [+] show detail - rubredoxin family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G17170.2 - [+] show detail - rubredoxin family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-2705-1 - 5-prime edge 
    GAAGTAGTAG TAGTTTTGGT GAAGAAGGAA GAGACAGTAG CTCCTGAAAT 
    AGCACCAGAC GTTGCCATCT ATCTTTCTAG TGTGATCGAA CGAAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5649404 [Map]; Strand: c
      • AT5G17170.1 - [+] show detail - rubredoxin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G17170.2 - [+] show detail - rubredoxin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2705-1 - 3-prime edge 
    ACTACTTCAA ACCCATCTCC CAAACTCCAT TCCTCTGTTT CTCTTTTATC 
    ACAGGTCTCT ATCTTCTCTT CCATATCTTT ACAAACGAAT CTGAAATTCT 
    CAATTAGAAG TTTGTTTTCA ATGGAGGGTC GAGTTCAATT TCTCGTTTTC 
    TTCCTCTTGA ATGTGATTTG GACTTAGCTT CATCTAAAAG TATGTATATT 
    TTTTTCTCTT GTTTTGGTTT GTGTGTTTAG AAAACTGTGT TTCAAGGAGT 
    TTCGTTGGAA GATTCGAAGA AGAGTGTATC AGAGATCTTC GCTGTCTCCG 
    AGAGAAAGAT CGGAGGGTTA AATGGGTTGA GAAGATTCGA AATCAAAGCG 
    AGAGCAGCAG CTTCGAAGAC GATAGAGGTT GAAGTAGACA AGCCTTTGGG 
    TCTGACTCTA GGCCAGAAGC AAGGCGGTGG AGTTATCATC ACCGTGAGTT 
    TTTTCCACTT AAGTCTCTGC AATGGAATGT CATCTTTGTA AATATGTTGT 
    TTGATAAAAT TGAGGGATTT GCTTTTGGTT TTCAGGGTGT GGACGGAGGT 
    GGGAACGCAN CAAAAGCAGG TCTTAAATCT GGAGATCAAG TTGTGTACAC 
    AAGCAGCTTC TTTGGAGATG AGCTTTGGCC TGCANATAAG CT

AT5G17170.1

Model type
Protein coding
Short Description
rubredoxin family protein
Computational Description
enhancer of sos3-1 (ENH1); FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT5G51010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17170.2

Model type
Protein coding
Short Description
rubredoxin family protein
Computational Description
enhancer of sos3-1 (ENH1); FUNCTIONS IN: metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: protein containing PDZ domain, a K-box domain, and a TPR region (TAIR:AT1G55480.1); Has 199 Blast hits to 197 proteins in 82 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR