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11-2770-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28453834 [Map]; Strand: c
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: -194; Region: promoter
    Flanking Genome Sequence: 11-2770-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CACAGCACAT CCAGAATCCG GACCAAAAAT GTCACATATT GTTGTTAGCA 
    CCGTCAAATT GAAATTTCTA CAAAGTGAAT GATTAATGTT ATTTAAGATA 
    TTGTTGAATT ATATCGTCCA TTTAACTATT TAAGTGTGAT AGCNTTTCAA 
    GTATCGATCA TTCATTCTAG TTTCAAATCT TGATCCATTT GATGAATCTT 
    TTACTATTCG AATTTCATCA CGACTAGCTA CAACCACCCT TGATTATATG 
    TTATGACTTC TGAAAACATC GAGAAACAAA AATTCAATAA TAGTGCGTAG 
    AAGAAGATGA TCAATGCGTA ATGAATACAG TAACTTTGCA TGTAGTATCT 
    TAGTTGTTTT AGTGACATAG CACATGTAGC AAGACGTAAT AAACGTTCTG 
    GAGATC

AT1G75780.1

Model type
Protein coding
Short Description
tubulin beta-1 chain
Curator Summary
beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses
Computational Description
tubulin beta-1 chain (TUB1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain (TAIR:AT1G20010.1); Has 23671 Blast hits to 23575 proteins in 4891 species: Archae - 36; Bacteria - 42; Metazoa - 4470; Fungi - 14216; Plants - 1549; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).
Link
InterPro Scan - TAIR