Home
Mutant Lines
11-2839-1

11-2839-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19516619 [Map]; Strand: w
  - AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT2G47570.2 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT2G47580.1 - [+] show detail - spliceosomal protein U1A
    Distance: -568; Region: promoter
Flanking Genome Sequence: 11-2839-1 - 3-prime edge
```
GATACATGGA CGGAAAGGTT TGAATTTTGT TGTTGTTTAG GTTGTTACTG 
CATTGAGTTC GATGTTATGT TACTTGGTGG CGACTCATGA ACTAATGCTC 
TGTGTGTTTG ATTTTATTAG GATGGAAAGA TTGCNTGTTA TTGTTGGTAC 
NTGTGACTTG ATGATGTTAG AATCGAAGAT GTTCCGGCTC TTACAGTTAC 
TGCATTGAGG TTCACTGAGA GCGCTAGAGC TAGGATC
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 19516735 [Map]; Strand: w
- AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
  Distance: 0; Region: exon2 (5UTR)
- AT2G47570.2 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
  Distance: 0; Region: exon2 (5UTR)
- AT2G47580.1 - [+] show detail - spliceosomal protein U1A
  Distance: -452; Region: promoter

CATGTATCGG ACCAGACGAG AGAGAGACAG TGGCGCTTTG TTCACTTTGC 
TCATGAACAA ACGCTTCAAA ATCACGGCAT TGAACTTGCT TTCTGTTCTC 
CTCACCAGAT ATCGGTTCGC CTAAAAAAAA AAAAANTTNA NTNTTNGNGG 
GNTTTTNANN AAAANCCNNA NCCTNNANAG GGNNCTGNAA AAAAANNTCG 
GGGGNTTNGG GCNNAAACCN TTTGGTTTTT TNGNTTTNNC CCCNGGTTNN 
AAAATNNANC CCCTAAANGG NNNAACCCCC CAAAAAAACC CCAAGGGGNN 
NGNNAAANTT TAAAAAAAAC CAAACCCAAA AATNGNNGGG GNGGNAAAAA 
AAAAAGGNAA CCNCCNAANA NTTTNTTTNA TTTNGGGGTT TTNNNGGGGC 
NAAANNTTTN ANNNGNCCCC NNAAAAAAAA NTTGGGNCNA NCNNNGGGGC 
TTNTNGGGGN TTTNGGNGNA ANAAANTAAA CCCCCCNTTT TTTTTNNNAN 
TNNAATTTGG GGGGGGCCNG GNAAAAANTT TTTTNNAANT NNNNNNNNNG 
GGNGGNNANN CCCNNGGCCC

AT2G47570.1

Model type: Protein coding
Short Description: Ribosomal protein L18e/L15 superfamily protein
Computational Description: Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1); Has 755 Blast hits to 755 proteins in 295 species: Archae - 15; Bacteria - 0; Metazoa - 328; Fungi - 154; Plants - 126; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47570.2

Model type: Protein coding
Short Description: Ribosomal protein L18e/L15 superfamily protein
Computational Description: Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039), Ribosomal protein L18e/L15 (InterPro:IPR021131); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1).
Link: InterPro Scan - TAIR

AT2G47580.1

Model type: Protein coding
Short Description: spliceosomal protein U1A
Curator Summary: encodes spliceosomal protein U1A
Computational Description: spliceosomal protein U1A (U1A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleolus, nucleus, U1 snRNP; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 2473 Blast hits to 2417 proteins in 290 species: Archae - 0; Bacteria - 37; Metazoa - 1259; Fungi - 517; Plants - 407; Viruses - 1; Other Eukaryotes - 252 (source: NCBI BLink).
Link: InterPro Scan - TAIR