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Mutant Lines
11-2909-1

11-2909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 1235094 [Map]; Strand: w
- AT1G04530.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon3 (CDS)

GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTGTAGCATA TGCTGCAAGA ACAATGCTGA AAAGAAAAAA 
CATATTATTA TCACAGGAAC TGATAACCAA TGGTGGTATT TCCAAAAAAT 
GTTCCAACAG ACCTATCATC AGGAGATGCT TGAACTGCAC GTTCAAAGTA 
GCTCATGGCT TTAGCTTCAT CTTGGTGAAG CT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20514672 [Map]; Strand: c
  - AT1G55000.1 - [+] show detail - peptidoglycan-binding LysM domain-containing protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G55000.2 - [+] show detail - peptidoglycan-binding LysM domain-containing protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G55000.3 - [+] show detail - peptidoglycan-binding LysM domain-containing protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 11-2909-1 - 3-prime edge
```
TTATGGACAG CATCTAGTTT CCCTGTGGAT AAGCTGCTTC CGCGACGATC 
AAAAACGCCG TCGACGATAA TAAGTTAATA ACCTCACCGG CGCCACCAAC 
ACCGCCGATC TATCAACCAA ACGCAATCTC GCCGCTAATT TCCCTCTCCA 
TGGCGCTTTA TTGCCGTGAT ACACTAATCC TCATCTTCCA AAAGCTCACC 
GTCGCCGATC TAGCGCGTGC GAGCTGCGTC TGTAAGGTTT GGAATT
```

AT1G04530.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G17940.1); Has 713 Blast hits to 362 proteins in 65 species: Archae - 10; Bacteria - 98; Metazoa - 37; Fungi - 8; Plants - 512; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55000.1

Model type: Protein coding
Short Description: peptidoglycan-binding LysM domain-containing protein
Computational Description: peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), F-box domain, Skp2-like (InterPro:IPR022364), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 156 Blast hits to 156 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55000.2

Model type: Protein coding
Short Description: peptidoglycan-binding LysM domain-containing protein
Computational Description: peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), F-box domain, Skp2-like (InterPro:IPR022364), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55000.3

Model type: Protein coding
Short Description: peptidoglycan-binding LysM domain-containing protein
Computational Description: peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), F-box domain, Skp2-like (InterPro:IPR022364), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR