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Mutant Lines
11-2925-1

11-2925-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 34404 [Map]; Strand: c
  - AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
  - AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
  - AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon7 (CDS)
  - AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
  - AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon8 (CDS)
Flanking Genome Sequence: 11-2925-1 - 5-prime edge
```
GTNATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATTCCG AAGAGGTAAA ACAAAAACCA ATGATTCATG 
GATATTGCAG AGTTCTTCTG GGAACTAACA CTATCAAAAT ATTTTCAGGG 
TCGTATAGCG TTTCAGGCTC TCTTTGCAAG AGAAAGATTG CCTCAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 34416 [Map]; Strand: c
- AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon8 (CDS)
- AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon8 (CDS)
- AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon7 (CDS)
- AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon8 (CDS)
- AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon8 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGNCCG TTCCGACCGT TTTNATCACT 
TCCTNCCACG AATCAGTAGT TGCATTGCTG TNGCTGTNGC TGTCTCTCAT 
TTTNATCTTA CCGGNGATNT ACTCNATAAC AATNCGGCCT GATTCTCATN 
NTGNCTCCTT CACATCCTCT CTATNCTTTC CTCCATNTTN ATCCTAANNG 
CATNNAGNTN NCTGGCGTCA CTCNCNNGNG NGCGTTATNT NGAGCCACCA 
GGANTGAGNN GGNTNNACAA GAATCTCTTC CTTCTNGGGC NNTGNTTTNA 
NCTCNTNCNC ANCGGNCNGT NACNANCAAC CTNCCTCNNA TTTTTATNNA 
TCANCTGGTN NCTTNAGCTC GGNNNTTNAG CCTTGGGTNN NCTCCAGTCC 
CAATCTAGNN NCATNNAGAT NNATNANAGC TNGGAAGNAT NTCCGNAAGC 
CANNNNNTNT TGATNCTNCG CNNAAGCCNG NGNTTNGGTN TCTCAAACGG 
TTGGAGTACT TTNCANCGGG NNNNCATNTN CANNNNATCT GCCTNGNAGT 
TNGAAANCTT GCNNCNAGNT NNGNNAAATG GGAACACNTN TNATTGGAAG 
CCTGGNAGCC GCTATACGAG NAAGAAGTNC NATGANAAGC CCNCNCCANA 
GCGAGNNGNA GNNNCCTNCT CGNNCNNNCG NGCNANGGGN NNNNNNNCTT 
CGNNNAGGAA GAAGAGCTCA TNNNNANNAG ANAGGATNNN NCNNANNNNC 
CCNNNNNCGG NNCGCNNNNN CNCGCGNNC

AT1G01060.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.3

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.4

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.5

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1).
Link: InterPro Scan - TAIR