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11-2966-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5565473 [Map]; Strand: c
      • AT3G16400.1 - [+] show detail - nitrile specifier protein 1
        Distance: -613; Region: promoter
      • AT3G16400.2 - [+] show detail - nitrile specifier protein 1
        Distance: -894; Region: promoter
    Flanking Genome Sequence: 11-2966-1 - 5-prime edge 
    GATATAGTGT AGACCCGTTT TTTGTCTCCT CCTCAGCTGC TCTCGTATGA 
    ATCATGCATA AAGCGCGTTT TCAACACATC CATCCATCGT TATTTATTAC 
    TCTACCTTCT AGTTTAATGT TGAACAGAAA AAAGAGAAGG TAAACTAAAA 
    AGAGGAAAAA AAAANTTAAA AAAAAAAANG GGGNCNCAAA NTTTTNCNTT 
    NGGGGGAANN NGGGGGGNAA TNNGTTTTNG ANNANAAATA AAAAAAAGGN 
    CNNCNGGGGG AGGNAANNAG GGGCANTTTT TNNAAAAANG GNNCCCTTNA 
    AAANNNNAAN NTNNNNCTTT GNCCCCNAAA AAAAGGGNNT NNNNAANTTT 
    CNNGGNAANT TTTTTTNGNN NNAAAAAANN GGNGGNCCAA NTTNGGAAAN 
    AAAAAAATTT TGNGGNCCCT TTTTTTTTTN GGGCCCCNGG TTTTNNAAAT 
    NTNNANNGGC CCCTTTTTGN AAAAAAANGG GNCCCTTTTT TTTTTTNGNA 
    AAAGGGGGGC NNAAAANNNG GNCNTNNAAA NNGCNNAANA AGGGGGNGGN 
    CNTTATTTTN GGGANCGNNA GGNNNAAAAA AAANACCCNN CNNTCNNGGN 
    GCTTTNNNNN TTTNNANNAA CAACNNCCCN GGTGGTGGGG GGGNTAAAAA 
    GNNCCCNGNN TTGTCTNGNC CTTCTNAACC AAAAANNGGG GGNGGGCCCC 
    NNCCCNATTN ANTNGTTNGG GNANNGNAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5565515 [Map]; Strand: c
      • AT3G16400.1 - [+] show detail - nitrile specifier protein 1
        Distance: -571; Region: promoter
      • AT3G16400.2 - [+] show detail - nitrile specifier protein 1
        Distance: -852; Region: promoter
    Flanking Genome Sequence: 11-2966-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTACCGACCG 
    TTACCGACCG TTACCGGTAT ATAGTCTATA TCAGACTTTT TTTGTTTTTT 
    TGGTGTAAAA CTATATCAGA TGGAAAAATA TCAACCAAAT AATGTAGAAA 
    CTATATCAAA CTTTTAACAA AACTATCAAC CCAATATTTT ATATTTTATT 
    CAAAAACAAT ACTAATAATT TTTCCTTTTC CTCGTTTTTT TTCTTTCTGA 
    TCAACCATTC ACACGTTGTT TTTCGTAATT ATGATTCTGC ATAATGCTTT 
    CTCTAAATCA AAAACTCCAC GCCACGGTTC AACTGATGTA GTGCCTCCAC 
    CGTTGTCGTT TGACTCGTTG CAGAGGACAC CATTATGCAC TTCGATTCAT 
    TTTCAAAATC GTCTTTCTCT ACTGAATTTT TACTCCATTT AATTTTTTGG 
    TCCATAGATA ACATAGACCA TTATACTAGT ATGTTAAATG TATACTTATC 
    AGTTACCGCA CAACATTAAT TCTTAAAGAG GGTTCATTTT CGAGAATTGA 
    GTACAACACT ACCATTAGGC CAAAATGCGA NAGGCAAAAA AAGATATAGC 
    ATATACTTAT CATGAATAAT GAAAATCACC AGCCCGGNCC GTCAACCANG 
    CNTGCCCCTA AAAAGGANGA NGNNGNNNAN NCCANGNNNC NGNNNGTNNG 
    NANCNGGGNA ACGAANTTTN NNCNTCACTA CTNGNNCATA NANNNGGGNN 
    ANANNTNAN

AT3G16400.1

Model type
Protein coding
Short Description
nitrile specifier protein 1
Curator Summary
Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational Description
nitrile specifier protein 1 (NSP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 4 (TAIR:AT3G16410.1); Has 12798 Blast hits to 6850 proteins in 422 species: Archae - 13; Bacteria - 486; Metazoa - 7547; Fungi - 708; Plants - 2515; Viruses - 41; Other Eukaryotes - 1488 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16400.2

Model type
Protein coding
Short Description
nitrile specifier protein 1
Curator Summary
Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational Description
MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470 (ATMLP-470); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 4 (TAIR:AT3G16410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR