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Mutant Lines
11-2974-1

11-2974-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 226852 [Map]; Strand: c
- AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
  Distance: -842; Region: promoter
- AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
  Distance: -842; Region: promoter

CCCATTGGTT GTGGAAGAAA TGTTTATACT CANCAGGTCA CGAGAGTGAG 
AATTGGGGAT TAGCTACATC TGATGAGTTT GAGCCTATCC CTAGGATCTG 
CCGCTTGATC TTAGCCGTCT ATGAGGAGAA TCTTCATGAC CCTATGTGGG 
CACCTCCTGA TGGTTATGGG ATTGATCCAA ATCATGTTAT TCTGAAGAAA 
GACTATGACC AGACTGAGGG TCGTGTGACG CCTTACATGA TCTACTTGGA 
TCATGAGAAT GGTGATGTGG TCTTGGCTAT TAGAGGGCTG AATTTAGCTA 
AGGAGTGTGA TTATGCTGTT CTTCTTGATA ACAAACTTGG GCAGACTAAG 
TTTGATGGAG GTTATGTACA TAACGGGTTG TTAAAGGCGG CCATGTGGGT 
TTTTGAAGAG GACATGTGGT TCTAAGGGAA TTACTCGAGG CAAACCCGAA 
CTATTCCTTG ACGTTTGTTT GGACNTTCTT TNGGAGCANG GGGTTGNTTC 
TTTGCTNGNC TTATTCNNGA TTCAAAACCN GGTTANGGNG GGGAACTTNG 
GGAGAAATAG GATTTNATGC TNNGNTAGNG NNTCCTCCNA NNATTTNGNC 
NNNCCCTCNA GNNANAGAAA NNGCCAANGT NATGATCNCN NNTANGNNAN 
NGGANNNNGG ATGGTGNNTN TGCANCCNNC TTANNNTCNT TNGGTANNNT 
AGNNGTACTT TNTACNNGGC NTNGNGTNNC GAANANAAAA AANNCGN

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 226916 [Map]; Strand: c
  - AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: -778; Region: promoter
  - AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: -778; Region: promoter
Flanking Genome Sequence: 11-2974-1 - 3-prime edge
```
ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
TGCCAATGGG TACAACCCAA GCAGTACACA CATTCAAGTA CAGGAACACA 
ACACAGTATC GACATGAGAA CCTATGAAGC AAGCAAGCAT CCTCTGTTGA 
ATTTTCTGGA GATGGGATCG GAGTACTCCA CAAGAACCCA CTGACACNGA 
GATTAGTCAG TGTGGATCAA GAGGCTCTAA GAATAAAGAC AGAATAATCA 
TAAGCTGGTC GGATCAAGCT
```

AT4G00500.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00500.2

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.2

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.3

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR